Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02466

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
2,758,009	+		MIT1002_02465	0.36	+1.2
2,758,012	-		MIT1002_02465	0.36	-1.3
2,758,022	+		MIT1002_02465	0.37	-0.7
2,758,022	+		MIT1002_02465	0.37	+0.4
2,758,022	+		MIT1002_02465	0.37	-0.7
2,758,030	-		MIT1002_02465	0.37	-0.2
2,758,030	-		MIT1002_02465	0.37	-2.1
2,758,032	+		MIT1002_02465	0.37	-1.3
2,758,032	+		MIT1002_02465	0.37	-1.3
2,758,040	-		MIT1002_02465	0.38	-0.7
2,758,046	+		MIT1002_02465	0.38	-3.0
2,758,078	+		MIT1002_02465	0.40	+0.0
2,758,221	+		MIT1002_02465	0.50	+0.9
2,758,322	+		MIT1002_02465	0.56	-2.0
2,758,322	-		MIT1002_02465	0.56	+0.6
2,758,522	-		MIT1002_02465	0.69	-0.3
2,758,539	+		MIT1002_02465	0.71	-1.2
2,758,665	+		MIT1002_02465	0.79	-1.0
2,758,738	+		MIT1002_02465	0.84	+0.6
2,758,746	-		MIT1002_02465	0.84	+0.3
2,758,746	-		MIT1002_02465	0.84	+0.1
2,758,751	-		MIT1002_02465	0.84	+0.7
2,758,756	-		MIT1002_02465	0.85	-1.0
2,758,763	-		MIT1002_02465	0.85	-1.7
2,758,841	-				-0.8
2,758,923	+				-0.5
2,758,923	+				-0.4
2,758,931	-				-0.3
2,758,974	+				+0.6
2,759,062	+				-1.6
2,759,087	+				-1.6
2,759,087	+				+1.4
2,759,087	+				-1.0
2,759,095	-				-0.8
2,759,095	-				+2.0
2,759,095	-				+0.5
2,759,095	-				-0.7
2,759,143	+		MIT1002_02466	0.12	-0.5
2,759,143	+		MIT1002_02466	0.12	+2.5
2,759,143	+		MIT1002_02466	0.12	-1.1
2,759,143	+		MIT1002_02466	0.12	-1.2
2,759,145	+		MIT1002_02466	0.12	-0.1
2,759,151	-		MIT1002_02466	0.12	-0.4
2,759,151	-		MIT1002_02466	0.12	+0.9
2,759,151	-		MIT1002_02466	0.12	+2.2
2,759,151	-		MIT1002_02466	0.12	+1.2
2,759,151	-		MIT1002_02466	0.12	-0.2
2,759,151	-		MIT1002_02466	0.12	+0.3
2,759,163	-		MIT1002_02466	0.13	-0.4
2,759,174	+		MIT1002_02466	0.14	+1.3
2,759,182	-		MIT1002_02466	0.14	-0.6
2,759,183	-		MIT1002_02466	0.15	+1.5
2,759,197	+		MIT1002_02466	0.16	-0.9
2,759,197	+		MIT1002_02466	0.16	-0.1
2,759,197	+		MIT1002_02466	0.16	-0.8
2,759,205	-		MIT1002_02466	0.16	-0.3
2,759,205	-		MIT1002_02466	0.16	+0.9
2,759,205	-		MIT1002_02466	0.16	-1.8
2,759,205	-		MIT1002_02466	0.16	+0.4
2,759,210	-		MIT1002_02466	0.17	-0.6
2,759,257	+		MIT1002_02466	0.20	-0.1
2,759,322	-		MIT1002_02466	0.25	+0.1
2,759,324	+		MIT1002_02466	0.25	-0.4
2,759,335	+		MIT1002_02466	0.26	-0.0
2,759,335	+		MIT1002_02466	0.26	+0.1
2,759,397	+		MIT1002_02466	0.30	+0.4
2,759,403	+		MIT1002_02466	0.31	+1.2
2,759,467	+		MIT1002_02466	0.36	+1.3
2,759,475	-		MIT1002_02466	0.36	-0.4
2,759,477	-		MIT1002_02466	0.36	+0.1
2,759,479	+		MIT1002_02466	0.36	-0.8
2,759,487	-		MIT1002_02466	0.37	+0.2
2,759,517	-		MIT1002_02466	0.39	-0.8
2,759,532	-		MIT1002_02466	0.40	+1.3
2,759,550	-		MIT1002_02466	0.42	+0.9
2,759,552	-		MIT1002_02466	0.42	-1.3
2,759,552	-		MIT1002_02466	0.42	-0.2
2,759,562	+		MIT1002_02466	0.43	+1.6
2,759,573	-		MIT1002_02466	0.43	+0.3
2,759,631	+		MIT1002_02466	0.48	+0.2
2,759,655	+		MIT1002_02466	0.49	+1.1
2,759,662	+		MIT1002_02466	0.50	-1.3
2,759,667	+		MIT1002_02466	0.50	+0.6
2,759,670	-		MIT1002_02466	0.51	-2.6
2,759,757	-		MIT1002_02466	0.57	+0.4
2,759,757	-		MIT1002_02466	0.57	+0.3
2,759,782	+		MIT1002_02466	0.59	-0.3
2,759,802	+		MIT1002_02466	0.60	-1.8
2,759,802	+		MIT1002_02466	0.60	-1.3
2,759,810	-		MIT1002_02466	0.61	-0.7
2,759,853	+		MIT1002_02466	0.64	-1.6
2,759,907	+		MIT1002_02466	0.68	+0.7
2,759,956	+		MIT1002_02466	0.72	+1.6
2,759,959	-		MIT1002_02466	0.72	+1.7
2,759,964	-		MIT1002_02466	0.72	+1.2
2,759,986	+		MIT1002_02466	0.74	+0.0
2,760,148	+		MIT1002_02466	0.86	-0.5
2,760,154	-		MIT1002_02466	0.86	-0.9
2,760,156	-		MIT1002_02466	0.86	+0.0
2,760,185	+		MIT1002_02466	0.89	-0.3
2,760,185	+		MIT1002_02466	0.89	+0.9
2,760,214	+				+1.4
2,760,217	-				+0.9
2,760,222	-				+0.2
2,760,222	-				+0.5
2,760,222	-				-0.1
2,760,222	-				-1.2
2,760,252	-				-1.8
2,760,297	-				+1.9
2,760,332	+				+1.1
2,760,360	+				-0.9
2,760,360	+				-0.6
2,760,360	+				-1.8
2,760,360	+				+0.1
2,760,360	+				-2.2
2,760,360	+				-1.7
2,760,360	+				-1.3
2,760,360	+				-0.7
2,760,368	-				+2.2
2,760,368	-				-1.0
2,760,368	-				+0.1
2,760,416	+				-0.9
2,760,439	+				+2.1
2,760,507	+		MIT1002_02467	0.20	+0.2
2,760,562	+		MIT1002_02467	0.64	+0.4
2,760,588	-				-1.6
2,760,590	+				-0.4
2,760,590	+				+1.2
2,760,598	-				+1.1
2,760,598	-				-1.0
2,760,598	-				-0.2
2,760,598	-				-1.9
2,760,623	+		MIT1002_02468	0.19	+0.1
2,760,631	-		MIT1002_02468	0.22	+2.3
2,760,661	-		MIT1002_02468	0.34	-0.1
2,760,677	-		MIT1002_02468	0.40	-1.3
2,760,703	-		MIT1002_02468	0.49	-0.0
2,760,832	+				-0.8
2,760,880	-				+0.9
2,760,970	-				+0.6
2,760,970	-				+0.8
2,761,033	-		MIT1002_02469	0.14	+0.5
2,761,153	+		MIT1002_02469	0.28	+1.1
2,761,153	+		MIT1002_02469	0.28	+0.4
2,761,153	+		MIT1002_02469	0.28	+1.1
2,761,161	-		MIT1002_02469	0.29	-0.7
2,761,161	-		MIT1002_02469	0.29	+1.3
2,761,161	-		MIT1002_02469	0.29	+2.9
2,761,161	-		MIT1002_02469	0.29	-0.4
2,761,161	-		MIT1002_02469	0.29	-0.6
2,761,166	-		MIT1002_02469	0.30	-0.2
2,761,166	-		MIT1002_02469	0.30	+1.6
2,761,166	-		MIT1002_02469	0.30	+0.2
2,761,166	-		MIT1002_02469	0.30	-1.3
2,761,245	-		MIT1002_02469	0.40	+1.4
2,761,289	+		MIT1002_02469	0.45	+0.9
2,761,289	+		MIT1002_02469	0.45	+0.9
2,761,291	-		MIT1002_02469	0.45	-0.5
2,761,292	-		MIT1002_02469	0.46	-2.2
2,761,336	-		MIT1002_02469	0.51	-0.5