Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02441

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
2,722,436	+				-1.2
2,722,458	+				-0.2
2,722,458	+				+0.4
2,722,466	-				-2.5
2,722,494	+				+0.9
2,722,513	-				-0.8
2,722,538	+		MIT1002_02440	0.12	-0.6
2,722,609	+		MIT1002_02440	0.21	-0.5
2,722,609	+		MIT1002_02440	0.21	-1.6
2,722,672	+		MIT1002_02440	0.28	+0.4
2,722,677	+		MIT1002_02440	0.29	+1.8
2,722,710	+		MIT1002_02440	0.33	-3.1
2,722,728	-		MIT1002_02440	0.35	-0.6
2,722,728	-		MIT1002_02440	0.35	+0.2
2,722,728	-		MIT1002_02440	0.35	+3.2
2,722,733	+		MIT1002_02440	0.36	-0.8
2,722,733	+		MIT1002_02440	0.36	-0.4
2,722,767	+		MIT1002_02440	0.40	-0.8
2,722,775	-		MIT1002_02440	0.41	+1.2
2,722,775	-		MIT1002_02440	0.41	+1.2
2,722,780	-		MIT1002_02440	0.42	-0.6
2,722,856	+		MIT1002_02440	0.52	-2.3
2,722,864	-		MIT1002_02440	0.53	-2.7
2,722,874	+		MIT1002_02440	0.54	+0.8
2,722,874	+		MIT1002_02440	0.54	-1.5
2,722,876	+		MIT1002_02440	0.54	+0.3
2,722,912	+		MIT1002_02440	0.59	+1.2
2,722,932	+		MIT1002_02440	0.61	+0.9
2,722,936	+		MIT1002_02440	0.62	-0.9
2,722,936	+		MIT1002_02440	0.62	-2.1
2,722,937	+		MIT1002_02440	0.62	+1.7
2,722,945	-		MIT1002_02440	0.63	-0.2
2,722,975	-		MIT1002_02440	0.66	-0.2
2,722,979	+		MIT1002_02440	0.67	+0.6
2,722,988	-		MIT1002_02440	0.68	+1.4
2,723,044	-		MIT1002_02440	0.75	-0.9
2,723,044	-		MIT1002_02440	0.75	-1.5
2,723,046	+		MIT1002_02440	0.75	-0.8
2,723,056	-		MIT1002_02440	0.77	-1.2
2,723,089	-		MIT1002_02440	0.81	-0.8
2,723,118	-		MIT1002_02440	0.84	+0.4
2,723,174	+				+2.9
2,723,180	-				+0.4
2,723,220	-				-2.2
2,723,220	-				+0.6
2,723,563	+		MIT1002_02441	0.43	-0.3
2,723,563	+		MIT1002_02441	0.43	-1.1
2,723,568	+		MIT1002_02441	0.44	-1.8
2,723,586	+		MIT1002_02441	0.50	-2.3
2,723,587	+		MIT1002_02441	0.50	-2.9
2,723,601	-		MIT1002_02441	0.55	+0.9
2,723,615	+		MIT1002_02441	0.59	+0.0
2,723,615	+		MIT1002_02441	0.59	+0.9
2,723,615	+		MIT1002_02441	0.59	-2.8
2,723,623	-		MIT1002_02441	0.62	-2.4
2,723,720	+				-1.7
2,723,876	+				-0.5
2,723,876	+				-1.1
2,723,884	-				-0.2
2,723,936	-				+0.1
2,723,957	+				-1.0
2,723,957	+				-0.8
2,723,969	-		MIT1002_02442	0.11	+1.1
2,723,978	+		MIT1002_02442	0.12	-0.5
2,723,984	+		MIT1002_02442	0.12	+0.7
2,723,992	-		MIT1002_02442	0.13	-2.2
2,724,049	+		MIT1002_02442	0.19	-1.1
2,724,055	-		MIT1002_02442	0.19	+0.6
2,724,057	-		MIT1002_02442	0.20	+0.0
2,724,105	+		MIT1002_02442	0.24	+0.5
2,724,113	-		MIT1002_02442	0.25	-1.7
2,724,226	-		MIT1002_02442	0.36	+1.2
2,724,280	+		MIT1002_02442	0.41	-2.9
2,724,296	+		MIT1002_02442	0.43	-0.6
2,724,298	+		MIT1002_02442	0.43	+0.0
2,724,328	+		MIT1002_02442	0.46	+2.2
2,724,336	+		MIT1002_02442	0.46	-1.9
2,724,336	+		MIT1002_02442	0.46	-0.8
2,724,336	+		MIT1002_02442	0.46	+0.3
2,724,336	+		MIT1002_02442	0.46	+0.9
2,724,336	-		MIT1002_02442	0.46	+1.2
2,724,336	-		MIT1002_02442	0.46	+0.3
2,724,344	-		MIT1002_02442	0.47	+0.1
2,724,428	-		MIT1002_02442	0.55	-2.4
2,724,487	+		MIT1002_02442	0.61	-0.3
2,724,487	+		MIT1002_02442	0.61	+0.0
2,724,487	+		MIT1002_02442	0.61	-1.0
2,724,487	+		MIT1002_02442	0.61	-0.5
2,724,495	-		MIT1002_02442	0.62	+0.2
2,724,607	+		MIT1002_02442	0.73	+1.0
2,724,614	+		MIT1002_02442	0.73	+2.0
2,724,614	+		MIT1002_02442	0.73	+0.1
2,724,622	-		MIT1002_02442	0.74	+0.6
2,724,658	-		MIT1002_02442	0.78	+1.0
2,724,685	+		MIT1002_02442	0.80	-0.3
2,724,715	-		MIT1002_02442	0.83	+0.8
2,724,720	-		MIT1002_02442	0.84	-0.5
2,724,720	-		MIT1002_02442	0.84	+0.6
2,724,737	+		MIT1002_02442	0.85	+0.6
2,724,737	+		MIT1002_02442	0.85	+2.4
2,724,737	+		MIT1002_02442	0.85	+0.3