Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02219

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
2,478,745	+		MIT1002_02218	0.56	+1.2
2,479,153	-		MIT1002_02218	0.84	+0.2
2,479,256	-				+0.0
2,479,444	+				+0.4
2,479,467	+				-0.8
2,479,488	+				+0.9
2,479,519	+				+1.9
2,479,527	-				-0.2
2,479,690	-				-0.4
2,479,690	-				-3.2
2,479,690	-				-1.3
2,479,782	+				-2.0
2,479,843	-		MIT1002_02219	0.15	-2.9
2,479,915	-		MIT1002_02219	0.22	-0.4
2,479,929	+		MIT1002_02219	0.23	-2.8
2,479,934	-		MIT1002_02219	0.23	-2.9
2,479,973	+		MIT1002_02219	0.27	+0.4
2,479,973	+		MIT1002_02219	0.27	-5.3
2,479,973	+		MIT1002_02219	0.27	-3.4
2,479,981	-		MIT1002_02219	0.28	-1.9
2,479,988	+		MIT1002_02219	0.29	-6.5
2,479,996	-		MIT1002_02219	0.29	-1.8
2,479,996	-		MIT1002_02219	0.29	-2.1
2,480,021	+		MIT1002_02219	0.32	-1.1
2,480,039	-		MIT1002_02219	0.34	+0.2
2,480,096	-		MIT1002_02219	0.39	+0.0
2,480,166	+		MIT1002_02219	0.46	-2.1
2,480,189	-		MIT1002_02219	0.48	-2.6
2,480,196	+		MIT1002_02219	0.49	-3.4
2,480,214	+		MIT1002_02219	0.50	-5.1
2,480,214	+		MIT1002_02219	0.50	-4.7
2,480,214	+		MIT1002_02219	0.50	-3.0
2,480,222	-		MIT1002_02219	0.51	-4.8
2,480,222	-		MIT1002_02219	0.51	-0.5
2,480,222	-		MIT1002_02219	0.51	-0.4
2,480,222	-		MIT1002_02219	0.51	+0.4
2,480,222	-		MIT1002_02219	0.51	-8.0
2,480,260	+		MIT1002_02219	0.55	-3.4
2,480,260	+		MIT1002_02219	0.55	-1.6
2,480,311	+		MIT1002_02219	0.60	-0.8
2,480,405	-		MIT1002_02219	0.69	-3.6
2,480,438	-		MIT1002_02219	0.72	-2.5
2,480,474	-		MIT1002_02219	0.75	+0.9
2,480,507	+		MIT1002_02219	0.78	+0.4
2,480,524	-		MIT1002_02219	0.80	+0.4
2,480,570	-		MIT1002_02219	0.85	-1.7
2,480,614	+		MIT1002_02219	0.89	-1.1
2,480,635	+				-1.9
2,480,643	-				-3.2
2,480,643	-				-2.3
2,480,758	-				-0.5
2,480,809	-		MIT1002_02220	0.13	-2.5
2,480,809	-		MIT1002_02220	0.13	-3.6
2,480,809	-		MIT1002_02220	0.13	-3.5
2,480,865	+		MIT1002_02220	0.21	-2.3
2,480,986	+		MIT1002_02220	0.40	-3.3
2,480,986	+		MIT1002_02220	0.40	-0.6
2,481,011	+		MIT1002_02220	0.44	-1.5
2,481,083	+		MIT1002_02220	0.55	-2.5
2,481,083	+		MIT1002_02220	0.55	-3.2
2,481,090	+		MIT1002_02220	0.56	-1.4
2,481,091	-		MIT1002_02220	0.56	-0.8
2,481,139	+		MIT1002_02220	0.63	-0.6
2,481,139	+		MIT1002_02220	0.63	-1.3
2,481,139	+		MIT1002_02220	0.63	-3.9
2,481,140	-		MIT1002_02220	0.63	-2.3
2,481,147	-		MIT1002_02220	0.65	-1.3
2,481,147	-		MIT1002_02220	0.65	-1.8
2,481,147	-		MIT1002_02220	0.65	-1.6
2,481,147	-		MIT1002_02220	0.65	+1.2
2,481,199	+		MIT1002_02220	0.73	-4.0
2,481,290	+		MIT1002_02220	0.86	-6.3
2,481,298	-		MIT1002_02220	0.88	-2.0
2,481,372	+				-0.7
2,481,397	+				-2.5
2,481,407	-				-3.1
2,481,435	+		MIT1002_02221	0.13	-1.1
2,481,458	+		MIT1002_02221	0.16	-2.0
2,481,458	+		MIT1002_02221	0.16	-2.2
2,481,458	+		MIT1002_02221	0.16	-0.6
2,481,458	+		MIT1002_02221	0.16	+0.1
2,481,458	+		MIT1002_02221	0.16	-0.9
2,481,466	-		MIT1002_02221	0.17	-1.8
2,481,479	+		MIT1002_02221	0.19	-3.0
2,481,499	-		MIT1002_02221	0.21	-1.9
2,481,499	-		MIT1002_02221	0.21	+0.4
2,481,589	-		MIT1002_02221	0.33	-2.2
2,481,589	-		MIT1002_02221	0.33	-1.1
2,481,655	+		MIT1002_02221	0.42	-0.6
2,481,674	+		MIT1002_02221	0.44	-0.7
2,481,702	-		MIT1002_02221	0.48	-2.5