Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01840

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
2,048,380	+		MIT1002_01839	0.16	-2.0
2,048,400	+		MIT1002_01839	0.20	-2.3
2,048,400	+		MIT1002_01839	0.20	-2.8
2,048,400	+		MIT1002_01839	0.20	-1.2
2,048,408	-		MIT1002_01839	0.22	-1.9
2,048,408	-		MIT1002_01839	0.22	-0.2
2,048,408	-		MIT1002_01839	0.22	-2.4
2,048,465	-		MIT1002_01839	0.35	-2.1
2,048,472	+		MIT1002_01839	0.36	+0.7
2,048,529	+		MIT1002_01839	0.49	-1.7
2,048,561	+		MIT1002_01839	0.56	-0.4
2,048,578	+		MIT1002_01839	0.60	-1.5
2,048,578	+		MIT1002_01839	0.60	+0.1
2,048,586	-		MIT1002_01839	0.62	-1.5
2,048,586	-		MIT1002_01839	0.62	-1.5
2,048,652	-		MIT1002_01839	0.76	-0.8
2,048,658	-		MIT1002_01839	0.78	-1.7
2,048,663	-		MIT1002_01839	0.79	-1.0
2,048,708	-		MIT1002_01839	0.89	-0.8
2,048,727	-				+1.0
2,048,778	-				+0.4
2,048,833	-				+0.6
2,048,833	-				-0.2
2,048,838	+				+1.3
2,048,846	-				-1.2
2,048,846	-				+0.1
2,048,917	-				-0.9
2,048,925	-				+1.3
2,048,981	+				-0.4
2,048,988	-				+1.6
2,048,989	-				+0.8
2,048,989	-				+0.3
2,049,036	+				+1.0
2,049,036	+				+1.3
2,049,036	+				-0.5
2,049,036	+				-3.2
2,049,044	-				+1.3
2,049,044	-				+0.1
2,049,046	-				-0.3
2,049,054	-				+1.1
2,049,061	-				-1.6
2,049,194	+				-0.9
2,049,280	+				-0.5
2,049,298	-				+1.1
2,049,382	+				-0.5
2,049,390	-				-1.5
2,049,390	-				-1.2
2,049,430	+				-1.7
2,049,498	-				-2.0
2,049,579	-		MIT1002_01840	0.11	-1.3
2,049,637	+		MIT1002_01840	0.15	-2.3
2,049,698	+		MIT1002_01840	0.18	-3.5
2,049,824	+		MIT1002_01840	0.25	-1.6
2,049,824	+		MIT1002_01840	0.25	-1.3
2,049,832	-		MIT1002_01840	0.25	-2.3
2,049,834	-		MIT1002_01840	0.25	+0.2
2,049,834	-		MIT1002_01840	0.25	-3.7
2,049,837	+		MIT1002_01840	0.25	-1.9
2,049,842	+		MIT1002_01840	0.26	+0.7
2,049,850	-		MIT1002_01840	0.26	-3.6
2,049,853	-		MIT1002_01840	0.26	-0.6
2,049,859	+		MIT1002_01840	0.26	-2.4
2,049,901	+		MIT1002_01840	0.29	-2.4
2,049,909	-		MIT1002_01840	0.29	+1.4
2,049,940	+		MIT1002_01840	0.31	-0.1
2,049,940	-		MIT1002_01840	0.31	-2.3
2,049,948	-		MIT1002_01840	0.31	+0.2
2,050,089	+		MIT1002_01840	0.39	-3.8
2,050,089	+		MIT1002_01840	0.39	-1.2
2,050,097	-		MIT1002_01840	0.39	-1.5
2,050,097	-		MIT1002_01840	0.39	-0.5
2,050,097	-		MIT1002_01840	0.39	-4.0
2,050,097	-		MIT1002_01840	0.39	-0.6
2,050,097	-		MIT1002_01840	0.39	-2.1
2,050,144	+		MIT1002_01840	0.42	-1.2
2,050,218	-		MIT1002_01840	0.46	-2.2
2,050,302	-		MIT1002_01840	0.50	-2.8
2,050,310	+		MIT1002_01840	0.51	-1.5
2,050,310	+		MIT1002_01840	0.51	-2.6
2,050,310	+		MIT1002_01840	0.51	-1.5
2,050,318	-		MIT1002_01840	0.51	-2.5
2,050,318	-		MIT1002_01840	0.51	-2.5
2,050,355	+		MIT1002_01840	0.53	+2.0
2,050,363	-		MIT1002_01840	0.53	+0.4
2,050,495	-		MIT1002_01840	0.61	-2.9
2,050,689	+		MIT1002_01840	0.71	-2.6
2,050,697	-		MIT1002_01840	0.71	-2.6
2,050,731	+		MIT1002_01840	0.73	-0.1
2,050,796	-		MIT1002_01840	0.77	-1.3
2,050,828	+		MIT1002_01840	0.78	-0.2
2,050,851	+		MIT1002_01840	0.80	-1.6
2,050,851	+		MIT1002_01840	0.80	-0.8
2,051,009	+		MIT1002_01840	0.88	-1.5
2,051,097	-				-1.7
2,051,172	+				-3.2
2,051,172	+				-1.5
2,051,178	-				+0.4
2,051,178	-				+1.2
2,051,178	-				+0.1
2,051,178	-				-1.2
2,051,269	-				-0.2
2,051,274	-				-0.1
2,051,288	-				+0.5
2,051,315	-				-3.0
2,051,391	+				+0.0
2,051,399	-				-0.7
2,051,443	-				+1.1
2,051,453	-				+0.4
2,051,714	+		MIT1002_01841	0.14	-0.1
2,051,730	-		MIT1002_01841	0.16	-2.8
2,051,760	+		MIT1002_01841	0.21	+0.5
2,051,768	-		MIT1002_01841	0.23	-0.7
2,051,866	-		MIT1002_01841	0.39	-0.9
2,051,866	-		MIT1002_01841	0.39	-1.9
2,051,895	+		MIT1002_01841	0.43	+0.7
2,051,929	+		MIT1002_01841	0.49	-0.9
2,051,994	+		MIT1002_01841	0.59	-3.0
2,052,016	+		MIT1002_01841	0.63	-0.6
2,052,016	+		MIT1002_01841	0.63	-0.1
2,052,024	-		MIT1002_01841	0.64	+1.6
2,052,065	+		MIT1002_01841	0.71	-0.9
2,052,199	+				-1.1