Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01827

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01826 and MIT1002_01827 are separated by 13 nucleotidesMIT1002_01827 and MIT1002_01828 overlap by 1 nucleotides MIT1002_01826: MIT1002_01826 - Adenylosuccinate lyase, at 2,034,493 to 2,035,860 _01826 MIT1002_01827: MIT1002_01827 - High frequency lysogenization protein HflD, at 2,035,874 to 2,036,500 _01827 MIT1002_01828: MIT1002_01828 - tRNA-specific 2-thiouridylase MnmA, at 2,036,500 to 2,037,627 _01828 Position (kb) 2035 2036 2037Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2035.987 kb on - strand, within MIT1002_01827at 2036.037 kb on - strand, within MIT1002_01827at 2036.201 kb on - strand, within MIT1002_01827at 2036.201 kb on - strand, within MIT1002_01827at 2036.201 kb on - strand, within MIT1002_01827at 2036.201 kb on - strand, within MIT1002_01827at 2036.201 kb on - strand, within MIT1002_01827

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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2,035,987 - MIT1002_01827 0.18 -5.0
2,036,037 - MIT1002_01827 0.26 +0.1
2,036,201 - MIT1002_01827 0.52 -2.0
2,036,201 - MIT1002_01827 0.52 -1.7
2,036,201 - MIT1002_01827 0.52 -2.6
2,036,201 - MIT1002_01827 0.52 -2.5
2,036,201 - MIT1002_01827 0.52 -3.0

Or see this region's nucleotide sequence