Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01816

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
2,022,878	+		MIT1002_01815	0.13	-1.1
2,022,903	-		MIT1002_01815	0.16	+0.1
2,022,903	-		MIT1002_01815	0.16	-0.7
2,022,971	-		MIT1002_01815	0.25	-2.8
2,023,010	+		MIT1002_01815	0.30	-2.0
2,023,010	+		MIT1002_01815	0.30	-0.5
2,023,010	+		MIT1002_01815	0.30	-0.8
2,023,010	+		MIT1002_01815	0.30	+0.2
2,023,015	+		MIT1002_01815	0.30	+0.6
2,023,018	-		MIT1002_01815	0.31	-0.4
2,023,018	-		MIT1002_01815	0.31	-0.7
2,023,027	+		MIT1002_01815	0.32	-1.9
2,023,062	+		MIT1002_01815	0.36	-2.2
2,023,062	+		MIT1002_01815	0.36	+0.9
2,023,130	+		MIT1002_01815	0.44	-0.2
2,023,196	-		MIT1002_01815	0.52	-0.5
2,023,534	+				+0.9
2,023,542	-				+2.3
2,023,542	-				+1.8
2,023,550	-				-0.4
2,023,565	+				+1.2
2,023,582	+				-0.5
2,023,628	+				-1.3
2,023,691	-				-2.0
2,023,735	-				-2.1
2,023,749	+				+0.9
2,023,844	+				-1.5
2,023,844	+				-4.0
2,023,844	+				+0.1
2,023,844	+				-2.3
2,023,844	+				-3.1
2,023,844	+				+0.2
2,023,844	+				-2.9
2,023,844	+				+0.4
2,023,844	+				-3.1
2,023,844	+				-0.4
2,023,844	+				-0.1
2,023,852	-				-0.2
2,023,852	-				-2.2
2,023,852	-				-2.4
2,023,852	-				+1.2
2,023,852	-				-1.3
2,023,852	-				-3.4
2,023,852	-				-1.0
2,023,852	-				-2.6
2,023,852	-				-0.4
2,023,852	-				+0.6
2,023,852	-				-1.6
2,023,862	-				-0.2
2,023,884	-				-0.2
2,023,891	+				-3.6
2,023,981	+				-2.3
2,024,029	+				-3.4
2,024,029	+				-0.2
2,024,052	+				-0.9
2,024,052	+				-2.7
2,024,052	+				-4.0
2,024,052	+				+0.4
2,024,052	+				-1.5
2,024,052	+				-1.5
2,024,060	-				-0.0
2,024,060	-				+0.1
2,024,060	-				-2.7
2,024,060	-				-0.7
2,024,060	-				-0.8
2,024,060	-				-1.0
2,024,070	-				-0.9
2,024,181	+		MIT1002_01816	0.14	-3.5
2,024,181	+		MIT1002_01816	0.14	-1.5
2,024,181	+		MIT1002_01816	0.14	-1.7
2,024,209	+		MIT1002_01816	0.15	-2.0
2,024,227	-		MIT1002_01816	0.16	-1.6
2,024,322	+		MIT1002_01816	0.20	-0.9
2,024,366	-		MIT1002_01816	0.22	-2.8
2,024,373	+		MIT1002_01816	0.22	-2.1
2,024,373	+		MIT1002_01816	0.22	-0.4
2,024,381	-		MIT1002_01816	0.22	-2.5
2,024,387	-		MIT1002_01816	0.22	-3.8
2,024,387	-		MIT1002_01816	0.22	-1.8
2,024,402	-		MIT1002_01816	0.23	-2.7
2,024,405	+		MIT1002_01816	0.23	-2.3
2,024,451	+		MIT1002_01816	0.25	-3.4
2,024,451	+		MIT1002_01816	0.25	-1.8
2,024,482	+		MIT1002_01816	0.26	-1.0
2,024,483	-		MIT1002_01816	0.27	-0.1
2,024,523	+		MIT1002_01816	0.28	-2.9
2,024,540	+		MIT1002_01816	0.29	-3.6
2,024,540	+		MIT1002_01816	0.29	-2.4
2,024,542	-		MIT1002_01816	0.29	-1.5
2,024,546	+		MIT1002_01816	0.29	-2.4
2,024,554	-		MIT1002_01816	0.29	-1.6
2,024,583	-		MIT1002_01816	0.31	-4.2
2,024,600	-		MIT1002_01816	0.31	-1.0
2,024,623	+		MIT1002_01816	0.32	-3.1
2,024,670	+		MIT1002_01816	0.34	-2.0
2,024,757	+		MIT1002_01816	0.38	-1.4
2,024,793	-		MIT1002_01816	0.40	-2.9
2,024,838	+		MIT1002_01816	0.41	-0.9
2,024,846	-		MIT1002_01816	0.42	-4.4
2,024,846	-		MIT1002_01816	0.42	+0.1
2,024,846	-		MIT1002_01816	0.42	-2.3
2,024,866	+		MIT1002_01816	0.43	-0.4
2,024,874	-		MIT1002_01816	0.43	+0.2
2,024,874	-		MIT1002_01816	0.43	-2.0
2,024,915	-		MIT1002_01816	0.45	-4.0
2,024,961	+		MIT1002_01816	0.47	-1.6
2,025,043	-		MIT1002_01816	0.50	-2.5
2,025,043	-		MIT1002_01816	0.50	-0.1
2,025,047	-		MIT1002_01816	0.50	-2.5
2,025,138	+		MIT1002_01816	0.54	-2.9
2,025,146	+		MIT1002_01816	0.54	-3.7
2,025,147	+		MIT1002_01816	0.54	-2.4
2,025,155	-		MIT1002_01816	0.55	+0.4
2,025,201	-		MIT1002_01816	0.57	-1.5
2,025,203	+		MIT1002_01816	0.57	+0.6
2,025,225	+		MIT1002_01816	0.58	-3.1
2,025,266	-		MIT1002_01816	0.60	-1.0
2,025,266	-		MIT1002_01816	0.60	-2.8
2,025,272	+		MIT1002_01816	0.60	-2.2
2,025,282	+		MIT1002_01816	0.60	-2.2
2,025,307	+		MIT1002_01816	0.61	-3.8
2,025,317	+		MIT1002_01816	0.62	-3.9
2,025,317	+		MIT1002_01816	0.62	-4.1
2,025,325	-		MIT1002_01816	0.62	-4.1
2,025,325	-		MIT1002_01816	0.62	-1.7
2,025,363	+		MIT1002_01816	0.64	-4.0
2,025,372	-		MIT1002_01816	0.64	+1.0
2,025,409	-		MIT1002_01816	0.66	-3.1
2,025,416	+		MIT1002_01816	0.66	-1.3
2,025,416	+		MIT1002_01816	0.66	-3.6
2,025,416	+		MIT1002_01816	0.66	-3.2
2,025,416	+		MIT1002_01816	0.66	-2.3
2,025,416	+		MIT1002_01816	0.66	-1.2
2,025,416	+		MIT1002_01816	0.66	+0.4
2,025,424	-		MIT1002_01816	0.66	-3.8
2,025,512	-		MIT1002_01816	0.70	-1.4
2,025,542	+		MIT1002_01816	0.71	-2.4
2,025,606	+		MIT1002_01816	0.74	-0.1
2,025,632	+		MIT1002_01816	0.75	-2.1
2,025,681	-		MIT1002_01816	0.77	-0.7
2,025,696	-		MIT1002_01816	0.78	-3.0
2,025,804	-		MIT1002_01816	0.82	+0.4
2,025,816	+		MIT1002_01816	0.83	-4.9
2,025,881	-		MIT1002_01816	0.85	-0.6
2,025,958	+		MIT1002_01816	0.89	-6.0
2,025,966	-		MIT1002_01816	0.89	-3.3
2,025,986	-		MIT1002_01816	0.90	-0.6
2,025,987	-		MIT1002_01816	0.90	-2.3
2,026,076	-				-1.6
2,026,101	+				-3.3
2,026,114	-				-1.5
2,026,188	+				-0.4
2,026,188	+				-0.4
2,026,198	+				-0.3
2,026,234	+				-0.7
2,026,234	+				+0.1
2,026,242	-				-2.6
2,026,242	-				-2.4
2,026,242	-				-0.5
2,026,242	-				-1.6
2,026,242	-				-3.1
2,026,256	+				+0.1
2,026,256	+				+1.3
2,026,256	+				+0.0
2,026,256	+				+0.1
2,026,257	+				-0.5
2,026,257	+				-0.2
2,026,257	-				-2.1
2,026,264	-				-0.2
2,026,264	-				+1.1
2,026,264	-				-1.0
2,026,264	-				-0.5
2,026,267	+				-0.1
2,026,361	+				+1.0
2,026,404	+				-2.7
2,026,567	-				+0.4
2,026,617	+		MIT1002_01817	0.43	+0.4
2,026,632	-		MIT1002_01817	0.53	+0.6
2,026,827	-				-1.7
2,026,855	-				+0.8
2,026,894	+				-0.7
2,026,902	-				-1.3
2,026,902	-				-1.3
2,026,929	+				-0.3
2,026,937	-				-1.1
2,027,017	-				-0.9
2,027,083	+		MIT1002_01818	0.20	+0.0
2,027,083	+		MIT1002_01818	0.20	-0.0
2,027,091	-		MIT1002_01818	0.24	-2.0
2,027,091	-		MIT1002_01818	0.24	-0.7
2,027,091	-		MIT1002_01818	0.24	+0.3
2,027,126	+		MIT1002_01818	0.40	+1.2
2,027,126	+		MIT1002_01818	0.40	+0.1
2,027,141	+		MIT1002_01818	0.47	+1.6
2,027,149	-		MIT1002_01818	0.51	+0.4