Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01810

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
2,013,188	-				+0.8
2,013,194	+				-0.9
2,013,202	+				+2.5
2,013,368	+		MIT1002_01809	0.18	-1.5
2,013,376	-		MIT1002_01809	0.20	-2.1
2,013,403	-		MIT1002_01809	0.26	-0.0
2,013,476	+		MIT1002_01809	0.41	+3.1
2,013,512	+		MIT1002_01809	0.49	+0.9
2,013,512	+		MIT1002_01809	0.49	+0.1
2,013,550	+		MIT1002_01809	0.57	-0.8
2,013,611	+		MIT1002_01809	0.69	-2.4
2,013,617	+		MIT1002_01809	0.71	-0.1
2,013,617	-		MIT1002_01809	0.71	+0.1
2,013,619	-		MIT1002_01809	0.71	+0.2
2,013,699	+		MIT1002_01809	0.88	-2.8
2,013,699	+		MIT1002_01809	0.88	+0.4
2,013,699	+		MIT1002_01809	0.88	-1.6
2,013,702	-		MIT1002_01809	0.88	-0.2
2,013,707	-		MIT1002_01809	0.90	+0.5
2,013,707	-		MIT1002_01809	0.90	-1.5
2,013,707	-		MIT1002_01809	0.90	-1.1
2,013,707	-		MIT1002_01809	0.90	-1.9
2,013,707	-		MIT1002_01809	0.90	-0.4
2,013,778	+				-2.0
2,013,786	-				+0.4
2,013,826	+				+2.1
2,013,888	-				+0.4
2,013,914	+				-0.2
2,013,953	-				+1.2
2,013,976	-				+1.0
2,014,009	-		MIT1002_01810	0.11	-1.7
2,014,029	+		MIT1002_01810	0.12	+0.1
2,014,088	+		MIT1002_01810	0.15	-1.2
2,014,088	+		MIT1002_01810	0.15	-1.3
2,014,088	+		MIT1002_01810	0.15	-0.6
2,014,088	+		MIT1002_01810	0.15	-0.9
2,014,088	+		MIT1002_01810	0.15	-1.3
2,014,096	-		MIT1002_01810	0.16	-0.3
2,014,119	-		MIT1002_01810	0.17	+1.2
2,014,123	+		MIT1002_01810	0.17	-3.2
2,014,129	-		MIT1002_01810	0.17	+0.3
2,014,235	-		MIT1002_01810	0.23	-0.6
2,014,266	+		MIT1002_01810	0.24	-0.7
2,014,280	+		MIT1002_01810	0.25	+0.6
2,014,280	+		MIT1002_01810	0.25	-1.0
2,014,371	-		MIT1002_01810	0.30	-0.2
2,014,373	+		MIT1002_01810	0.30	-0.6
2,014,373	+		MIT1002_01810	0.30	-0.0
2,014,373	+		MIT1002_01810	0.30	-0.8
2,014,381	-		MIT1002_01810	0.30	+0.2
2,014,381	-		MIT1002_01810	0.30	-2.4
2,014,383	+		MIT1002_01810	0.30	-0.2
2,014,383	+		MIT1002_01810	0.30	-1.6
2,014,383	+		MIT1002_01810	0.30	+0.6
2,014,391	-		MIT1002_01810	0.31	-0.9
2,014,391	-		MIT1002_01810	0.31	-0.8
2,014,417	+		MIT1002_01810	0.32	-2.0
2,014,425	-		MIT1002_01810	0.32	-2.3
2,014,537	+		MIT1002_01810	0.38	+0.6
2,014,622	+		MIT1002_01810	0.42	-0.4
2,014,634	+		MIT1002_01810	0.43	-0.2
2,014,668	-		MIT1002_01810	0.45	-0.8
2,014,673	+		MIT1002_01810	0.45	-1.3
2,014,705	-		MIT1002_01810	0.47	-0.5
2,014,705	-		MIT1002_01810	0.47	+0.9
2,014,705	-		MIT1002_01810	0.47	-0.1
2,014,776	+		MIT1002_01810	0.50	-0.9
2,014,851	+		MIT1002_01810	0.54	+0.0
2,014,851	+		MIT1002_01810	0.54	-0.4
2,014,851	+		MIT1002_01810	0.54	-2.1
2,014,859	-		MIT1002_01810	0.54	+0.8
2,014,879	-		MIT1002_01810	0.55	+0.3
2,014,886	+		MIT1002_01810	0.56	-2.3
2,014,887	+		MIT1002_01810	0.56	-0.6
2,014,897	-		MIT1002_01810	0.56	-0.4
2,014,993	+		MIT1002_01810	0.61	-1.5
2,015,000	+		MIT1002_01810	0.62	+0.4
2,015,001	-		MIT1002_01810	0.62	-0.2
2,015,001	-		MIT1002_01810	0.62	+0.6
2,015,001	-		MIT1002_01810	0.62	+0.0
2,015,001	-		MIT1002_01810	0.62	-1.4
2,015,008	-		MIT1002_01810	0.62	-0.3
2,015,136	-		MIT1002_01810	0.68	-0.5
2,015,230	+		MIT1002_01810	0.73	+0.9
2,015,230	+		MIT1002_01810	0.73	-0.9
2,015,238	-		MIT1002_01810	0.74	-1.2
2,015,238	-		MIT1002_01810	0.74	+0.2
2,015,259	+		MIT1002_01810	0.75	+0.1
2,015,374	-		MIT1002_01810	0.81	+0.1
2,015,375	+		MIT1002_01810	0.81	-0.4
2,015,383	-		MIT1002_01810	0.81	-0.4
2,015,385	+		MIT1002_01810	0.81	+0.5
2,015,385	+		MIT1002_01810	0.81	-0.6
2,015,385	+		MIT1002_01810	0.81	-0.8
2,015,385	+		MIT1002_01810	0.81	+4.0
2,015,393	-		MIT1002_01810	0.81	+0.6
2,015,393	-		MIT1002_01810	0.81	-1.9
2,015,393	-		MIT1002_01810	0.81	-1.2
2,015,393	-		MIT1002_01810	0.81	-1.5
2,015,418	+		MIT1002_01810	0.83	+2.3
2,015,692	+				+0.5
2,015,692	+				+0.7
2,015,700	-				+3.0
2,015,700	-				-1.8
2,016,074	-				+0.1
2,016,093	+				+0.5
2,016,173	+				-0.3
2,016,181	-				+2.5
2,016,181	-				-0.7
2,016,181	-				+1.1
2,016,237	-				-1.3
2,016,326	+				-1.3
2,016,328	-				-0.6
2,016,328	-				+0.4
2,016,331	+				+0.5
2,016,403	+		MIT1002_01811	0.12	-2.2
2,016,403	+		MIT1002_01811	0.12	-0.2
2,016,411	-		MIT1002_01811	0.12	-1.0
2,016,411	-		MIT1002_01811	0.12	-0.9
2,016,506	-		MIT1002_01811	0.16	-0.9
2,016,506	-		MIT1002_01811	0.16	-0.9
2,016,544	-		MIT1002_01811	0.17	-0.2
2,016,551	-		MIT1002_01811	0.17	-0.9
2,016,555	-		MIT1002_01811	0.18	+0.6
2,016,606	-		MIT1002_01811	0.19	+0.1
2,016,649	-		MIT1002_01811	0.21	+1.0
2,016,683	+		MIT1002_01811	0.22	+1.2
2,016,683	+		MIT1002_01811	0.22	-1.3
2,016,683	+		MIT1002_01811	0.22	+0.7
2,016,684	-		MIT1002_01811	0.22	-2.0
2,016,691	-		MIT1002_01811	0.23	+0.1
2,016,691	-		MIT1002_01811	0.23	+0.7
2,016,693	+		MIT1002_01811	0.23	-1.2
2,016,693	+		MIT1002_01811	0.23	-1.2
2,016,701	-		MIT1002_01811	0.23	-0.8
2,016,746	-		MIT1002_01811	0.25	-0.1