Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01388

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
1,538,694	+		MIT1002_01387	0.45	-0.1
1,538,702	-		MIT1002_01387	0.45	+0.3
1,538,751	+		MIT1002_01387	0.49	-1.1
1,538,756	+		MIT1002_01387	0.49	-0.7
1,538,756	+		MIT1002_01387	0.49	-0.0
1,538,756	+		MIT1002_01387	0.49	-0.3
1,538,756	+		MIT1002_01387	0.49	-1.1
1,538,756	+		MIT1002_01387	0.49	+0.8
1,538,764	-		MIT1002_01387	0.50	+0.2
1,538,766	+		MIT1002_01387	0.50	+0.3
1,538,772	-		MIT1002_01387	0.51	+0.1
1,538,773	+		MIT1002_01387	0.51	-2.2
1,538,774	-		MIT1002_01387	0.51	-1.8
1,538,834	+		MIT1002_01387	0.55	-0.9
1,538,834	+		MIT1002_01387	0.55	-1.9
1,538,842	-		MIT1002_01387	0.56	-1.9
1,538,842	-		MIT1002_01387	0.56	-0.8
1,538,842	-		MIT1002_01387	0.56	+0.7
1,538,862	-		MIT1002_01387	0.57	+1.6
1,538,862	-		MIT1002_01387	0.57	-0.9
1,538,882	+		MIT1002_01387	0.59	-0.1
1,539,033	-		MIT1002_01387	0.70	-2.1
1,539,102	+		MIT1002_01387	0.75	-0.1
1,539,127	+		MIT1002_01387	0.77	-1.5
1,539,134	+		MIT1002_01387	0.78	+2.4
1,539,142	-		MIT1002_01387	0.78	+0.0
1,539,142	-		MIT1002_01387	0.78	+2.2
1,539,142	-		MIT1002_01387	0.78	-0.1
1,539,230	-		MIT1002_01387	0.85	+1.0
1,539,290	+		MIT1002_01387	0.89	-1.7
1,539,300	+		MIT1002_01387	0.90	+0.8
1,539,478	+				+1.3
1,539,587	-				+0.5
1,539,614	-				+1.7
1,539,614	-				+0.4
1,539,667	+				-1.0
1,539,667	+				+0.3
1,539,677	+				+1.5
1,539,677	+				-1.4
1,539,677	+				-2.1
1,539,677	+				-0.1
1,539,685	-				-1.1
1,539,685	-				+0.5
1,539,685	-				+0.3
1,539,685	-				+0.4
1,539,703	-				+0.4
1,539,864	-		MIT1002_01388	0.25	+1.0
1,539,941	+		MIT1002_01388	0.33	+0.6
1,539,944	+		MIT1002_01388	0.33	+0.7
1,540,094	-		MIT1002_01388	0.48	+2.5
1,540,094	-		MIT1002_01388	0.48	+0.8
1,540,094	-		MIT1002_01388	0.48	+0.7
1,540,226	-		MIT1002_01388	0.61	-1.9
1,540,275	+		MIT1002_01388	0.66	-1.9
1,540,275	+		MIT1002_01388	0.66	-2.8
1,540,277	+		MIT1002_01388	0.66	-0.6
1,540,277	+		MIT1002_01388	0.66	-2.5
1,540,277	-		MIT1002_01388	0.66	+1.8
1,540,283	-		MIT1002_01388	0.67	+0.9
1,540,283	-		MIT1002_01388	0.67	-0.6
1,540,283	-		MIT1002_01388	0.67	-1.2
1,540,283	-		MIT1002_01388	0.67	+0.8
1,540,285	-		MIT1002_01388	0.67	-2.6
1,540,285	-		MIT1002_01388	0.67	+1.3
1,540,285	-		MIT1002_01388	0.67	-1.2
1,540,285	-		MIT1002_01388	0.67	-1.3
1,540,317	-		MIT1002_01388	0.70	+1.0
1,540,422	-		MIT1002_01388	0.81	+0.5
1,540,422	-		MIT1002_01388	0.81	-0.7
1,540,427	+		MIT1002_01388	0.81	+0.3
1,540,427	+		MIT1002_01388	0.81	-1.2
1,540,437	+		MIT1002_01388	0.82	-3.3
1,540,491	+		MIT1002_01388	0.88	-0.5
1,540,510	-		MIT1002_01388	0.89	-0.2
1,540,515	-				+0.7
1,540,531	+				-1.2
1,540,568	-				-0.6
1,540,571	+				+1.3
1,540,571	+				+1.0
1,540,579	-				+0.5
1,540,621	+				-1.4
1,540,629	+				-1.6
1,540,629	-				-0.6
1,540,637	-				+1.0
1,540,755	+		MIT1002_01389	0.20	-0.1
1,540,755	+		MIT1002_01389	0.20	+1.6
1,540,755	+		MIT1002_01389	0.20	-0.3
1,540,763	-		MIT1002_01389	0.21	+0.9
1,540,763	-		MIT1002_01389	0.21	+3.2
1,540,763	-		MIT1002_01389	0.21	+1.0
1,540,794	-		MIT1002_01389	0.25	-0.6
1,540,811	-		MIT1002_01389	0.28	+0.7
1,540,818	+		MIT1002_01389	0.29	-0.7
1,540,852	-		MIT1002_01389	0.33	+0.1
1,540,865	+		MIT1002_01389	0.35	-0.5
1,540,873	-		MIT1002_01389	0.36	+1.7
1,540,894	+		MIT1002_01389	0.40	+0.2
1,540,975	+		MIT1002_01389	0.51	-1.3
1,540,983	-		MIT1002_01389	0.52	-1.7
1,540,983	-		MIT1002_01389	0.52	+0.1
1,541,040	-		MIT1002_01389	0.60	+0.8
1,541,169	+		MIT1002_01389	0.79	+0.5
1,541,169	+		MIT1002_01389	0.79	-0.3
1,541,171	+		MIT1002_01389	0.79	+1.8
1,541,177	-		MIT1002_01389	0.80	+0.3
1,541,250	+				+0.6
1,541,279	-				-0.7
1,541,288	-				+0.0
1,541,330	+				+0.5
1,541,363	+				+0.1
1,541,398	-		MIT1002_01390	0.13	-0.6
1,541,399	+		MIT1002_01390	0.13	-0.7
1,541,430	+		MIT1002_01390	0.18	+1.2
1,541,441	+		MIT1002_01390	0.19	+0.7
1,541,441	+		MIT1002_01390	0.19	-0.5
1,541,441	+		MIT1002_01390	0.19	+1.0
1,541,441	+		MIT1002_01390	0.19	-0.1
1,541,449	-		MIT1002_01390	0.21	-0.2
1,541,467	+		MIT1002_01390	0.23	-2.5
1,541,516	-		MIT1002_01390	0.31	-1.8
1,541,516	-		MIT1002_01390	0.31	+0.3
1,541,551	+		MIT1002_01390	0.36	+0.0
1,541,551	+		MIT1002_01390	0.36	+1.0
1,541,551	+		MIT1002_01390	0.36	-0.4
1,541,551	+		MIT1002_01390	0.36	-0.4
1,541,557	+		MIT1002_01390	0.37	-1.4
1,541,596	+		MIT1002_01390	0.43	+0.6