Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01328 and MIT1002_01329 are separated by 247 nucleotides MIT1002_01329 and MIT1002_01330 are separated by 3 nucleotides MIT1002_01330 and MIT1002_01331 overlap by 1 nucleotides MIT1002_01331 and MIT1002_01332 are separated by 36 nucleotides
MIT1002_01328: MIT1002_01328 - hypothetical protein, at 1,474,627 to 1,475,478
_01328
MIT1002_01329: MIT1002_01329 - Aspartate--tRNA ligase, at 1,475,726 to 1,477,486
_01329
MIT1002_01330: MIT1002_01330 - Dihydroneopterin triphosphate pyrophosphatase, at 1,477,490 to 1,477,930
_01330
MIT1002_01331: MIT1002_01331 - Crossover junction endodeoxyribonuclease RuvC, at 1,477,930 to 1,478,448
_01331
MIT1002_01332: MIT1002_01332 - Holliday junction ATP-dependent DNA helicase RuvA, at 1,478,485 to 1,479,105
_01332
Position (kb) 1475
1476
1477
1478 Strain fitness (log2 ratio) -1
0
1 at 1474.730 kb on - strand, within MIT1002_01328 at 1474.939 kb on - strand, within MIT1002_01328 at 1474.946 kb on + strand, within MIT1002_01328 at 1474.986 kb on + strand, within MIT1002_01328 at 1475.096 kb on - strand, within MIT1002_01328 at 1475.109 kb on - strand, within MIT1002_01328 at 1475.198 kb on - strand, within MIT1002_01328 at 1475.234 kb on - strand, within MIT1002_01328 at 1475.241 kb on + strand, within MIT1002_01328 at 1475.249 kb on - strand, within MIT1002_01328 at 1475.254 kb on - strand, within MIT1002_01328 at 1475.271 kb on + strand, within MIT1002_01328 at 1475.377 kb on + strand, within MIT1002_01328 at 1475.387 kb on + strand, within MIT1002_01328 at 1475.387 kb on + strand, within MIT1002_01328 at 1475.395 kb on - strand at 1475.397 kb on + strand at 1475.405 kb on - strand at 1475.405 kb on - strand at 1475.459 kb on - strand at 1477.547 kb on + strand, within MIT1002_01330 at 1477.683 kb on + strand, within MIT1002_01330 at 1477.947 kb on + strand at 1478.443 kb on + strand at 1478.451 kb on - strand at 1478.453 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 1,474,730 - MIT1002_01328 0.12 +0.5 1,474,939 - MIT1002_01328 0.37 +1.4 1,474,946 + MIT1002_01328 0.37 +0.6 1,474,986 + MIT1002_01328 0.42 -1.5 1,475,096 - MIT1002_01328 0.55 -1.0 1,475,109 - MIT1002_01328 0.57 -0.7 1,475,198 - MIT1002_01328 0.67 -0.7 1,475,234 - MIT1002_01328 0.71 +1.3 1,475,241 + MIT1002_01328 0.72 +1.1 1,475,249 - MIT1002_01328 0.73 +0.9 1,475,254 - MIT1002_01328 0.74 -0.3 1,475,271 + MIT1002_01328 0.76 -0.2 1,475,377 + MIT1002_01328 0.88 -0.3 1,475,387 + MIT1002_01328 0.89 +1.0 1,475,387 + MIT1002_01328 0.89 -0.1 1,475,395 - +1.5 1,475,397 + -1.5 1,475,405 - +0.6 1,475,405 - +0.3 1,475,459 - -0.5 1,477,547 + MIT1002_01330 0.13 -0.8 1,477,683 + MIT1002_01330 0.44 -0.1 1,477,947 + +1.0 1,478,443 + +0.2 1,478,451 - +1.3 1,478,453 + +1.7
Or see this region's nucleotide sequence