Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01224

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
1,348,259	+		MIT1002_01223	0.31	+0.4
1,348,342	-		MIT1002_01223	0.44	-0.1
1,348,389	+		MIT1002_01223	0.51	-0.1
1,348,527	+		MIT1002_01223	0.73	-0.7
1,348,544	+		MIT1002_01223	0.76	-0.5
1,348,544	+		MIT1002_01223	0.76	-0.2
1,348,544	+		MIT1002_01223	0.76	+0.3
1,348,544	+		MIT1002_01223	0.76	+0.6
1,348,544	+		MIT1002_01223	0.76	+0.1
1,348,578	-		MIT1002_01223	0.81	-1.3
1,348,599	-		MIT1002_01223	0.84	-0.2
1,348,632	+		MIT1002_01223	0.89	+0.1
1,348,635	-		MIT1002_01223	0.90	-1.7
1,348,642	+				-0.4
1,348,642	+				+0.7
1,348,643	+				-0.9
1,348,643	+				+1.0
1,348,650	-				-0.1
1,348,650	-				-1.1
1,348,962	-				+1.7
1,348,987	-				+1.6
1,348,993	-				-1.1
1,349,004	-				+1.2
1,349,034	-		MIT1002_01224	0.11	+0.0
1,349,036	+		MIT1002_01224	0.12	-0.7
1,349,103	-		MIT1002_01224	0.26	-1.4
1,349,140	+		MIT1002_01224	0.34	-0.5
1,349,169	+		MIT1002_01224	0.41	+1.0
1,349,177	-		MIT1002_01224	0.42	+0.6
1,349,177	-		MIT1002_01224	0.42	-0.3
1,349,177	-		MIT1002_01224	0.42	+1.3
1,349,177	-		MIT1002_01224	0.42	+0.1
1,349,258	-		MIT1002_01224	0.60	+0.8
1,349,327	-		MIT1002_01224	0.75	+0.2
1,349,366	+		MIT1002_01224	0.84	-0.2
1,349,376	-		MIT1002_01224	0.86	+2.5
1,349,427	-				-0.1
1,349,439	+				+0.7
1,349,447	-				+1.2
1,349,447	-				-1.5
1,349,447	-				+0.1
1,349,449	+				+0.4
1,349,494	+				+1.1
1,349,494	+				-0.3
1,349,502	-				+0.3
1,349,502	-				+1.2
1,349,522	-				-0.2
1,349,604	-		MIT1002_01225	0.16	-1.5
1,349,616	-		MIT1002_01225	0.19	-0.0
1,349,729	+		MIT1002_01225	0.46	-0.4
1,349,754	-		MIT1002_01225	0.52	+0.3
1,349,836	-		MIT1002_01225	0.72	-0.2
1,349,886	+		MIT1002_01225	0.84	-1.8
1,350,018	-				+1.7
1,350,018	-				+0.5
1,350,050	-				+0.4
1,350,183	-		MIT1002_01226	0.41	-0.9
1,350,188	-		MIT1002_01226	0.45	-3.0
1,350,227	+		MIT1002_01226	0.76	-1.2
1,350,235	-		MIT1002_01226	0.83	+0.8
1,350,245	-				+0.6
1,350,263	+				+0.2
1,350,273	+				+0.6
1,350,385	+		MIT1002_01227	0.15	+2.1
1,350,424	+		MIT1002_01227	0.21	+1.1
1,350,427	-		MIT1002_01227	0.22	+1.7