Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01157

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
1,270,288	-		MIT1002_01156	0.56	-1.3
1,270,309	+		MIT1002_01156	0.57	+1.5
1,270,386	+		MIT1002_01156	0.63	+0.2
1,270,578	-		MIT1002_01156	0.76	-0.6
1,270,595	-		MIT1002_01156	0.77	-0.1
1,270,600	-		MIT1002_01156	0.77	+1.4
1,270,600	-		MIT1002_01156	0.77	-0.6
1,270,601	-		MIT1002_01156	0.77	-1.3
1,270,643	-		MIT1002_01156	0.80	-0.8
1,270,643	-		MIT1002_01156	0.80	-0.6
1,270,661	+		MIT1002_01156	0.81	+0.6
1,270,682	+		MIT1002_01156	0.83	-1.0
1,270,682	+		MIT1002_01156	0.83	+0.1
1,270,684	-		MIT1002_01156	0.83	-0.5
1,270,692	+		MIT1002_01156	0.83	-0.1
1,270,692	+		MIT1002_01156	0.83	-0.3
1,270,692	+		MIT1002_01156	0.83	+0.4
1,270,770	-		MIT1002_01156	0.89	-1.3
1,270,774	-		MIT1002_01156	0.89	+1.4
1,270,798	-				-1.2
1,270,852	-				-0.8
1,270,874	-				+0.2
1,270,952	+				-0.6
1,270,979	-				+1.8
1,271,006	-				+0.6
1,271,058	+				+1.1
1,271,149	+				-0.6
1,271,150	+				+0.3
1,271,286	+				-1.6
1,271,296	+				-1.1
1,271,304	-				+0.6
1,271,336	-				-0.9
1,271,618	-		MIT1002_01157	0.12	-3.6
1,271,659	-		MIT1002_01157	0.13	-0.0
1,271,717	-		MIT1002_01157	0.15	-1.2
1,271,741	+		MIT1002_01157	0.16	-0.7
1,271,768	+		MIT1002_01157	0.17	-1.6
1,272,028	+		MIT1002_01157	0.26	-2.6
1,272,103	+		MIT1002_01157	0.29	-2.5
1,272,110	+		MIT1002_01157	0.29	-1.2
1,272,118	-		MIT1002_01157	0.30	-1.4
1,272,146	+		MIT1002_01157	0.31	-1.8
1,272,163	+		MIT1002_01157	0.31	-1.0
1,272,204	-		MIT1002_01157	0.33	-1.6
1,272,206	-		MIT1002_01157	0.33	+0.3
1,272,220	+		MIT1002_01157	0.33	-2.4
1,272,220	+		MIT1002_01157	0.33	-2.6
1,272,232	+		MIT1002_01157	0.34	-0.7
1,272,232	+		MIT1002_01157	0.34	-1.3
1,272,263	-		MIT1002_01157	0.35	-1.2
1,272,318	+		MIT1002_01157	0.37	-0.9
1,272,341	-		MIT1002_01157	0.37	-1.6
1,272,355	-		MIT1002_01157	0.38	-1.5
1,272,368	+		MIT1002_01157	0.38	+1.1
1,272,398	-		MIT1002_01157	0.39	-1.9
1,272,596	+		MIT1002_01157	0.46	-0.9
1,272,642	-		MIT1002_01157	0.48	-0.8
1,272,683	+		MIT1002_01157	0.49	+0.4
1,272,719	-		MIT1002_01157	0.51	-1.8
1,272,762	+		MIT1002_01157	0.52	-0.0
1,272,762	-		MIT1002_01157	0.52	-0.3
1,272,762	-		MIT1002_01157	0.52	-1.2
1,272,762	-		MIT1002_01157	0.52	-1.2
1,272,981	-		MIT1002_01157	0.60	-2.1
1,273,014	+		MIT1002_01157	0.61	-2.0
1,273,014	+		MIT1002_01157	0.61	-0.9
1,273,067	-		MIT1002_01157	0.63	-0.5
1,273,264	+		MIT1002_01157	0.70	-0.2
1,273,272	-		MIT1002_01157	0.70	+1.1
1,273,285	-		MIT1002_01157	0.70	-1.7
1,273,292	+		MIT1002_01157	0.71	+0.4
1,273,292	+		MIT1002_01157	0.71	-0.2
1,273,300	-		MIT1002_01157	0.71	-1.5
1,273,352	+		MIT1002_01157	0.73	+0.1
1,273,510	+		MIT1002_01157	0.78	+0.4
1,273,597	+		MIT1002_01157	0.81	+1.4
1,273,856	-				-0.3
1,274,170	-				-3.6
1,274,192	+				-0.1
1,274,195	+				+0.3
1,274,254	+				-0.6
1,274,254	-				-0.3
1,274,282	+				+0.3
1,274,290	+				-0.6
1,274,302	-				-1.7
1,274,309	+		MIT1002_01158	0.10	-0.8
1,274,314	+		MIT1002_01158	0.11	-0.6
1,274,393	-		MIT1002_01158	0.18	+1.1
1,274,393	-		MIT1002_01158	0.18	+1.1
1,274,473	+		MIT1002_01158	0.25	+0.3
1,274,481	-		MIT1002_01158	0.25	-0.4
1,274,481	-		MIT1002_01158	0.25	-0.7
1,274,481	-		MIT1002_01158	0.25	-0.8
1,274,486	-		MIT1002_01158	0.26	+0.0
1,274,487	+		MIT1002_01158	0.26	-1.6
1,274,531	+		MIT1002_01158	0.30	-0.0
1,274,531	+		MIT1002_01158	0.30	+0.0
1,274,563	-		MIT1002_01158	0.33	+0.6
1,274,567	+		MIT1002_01158	0.33	+1.4
1,274,571	-		MIT1002_01158	0.33	-0.6
1,274,573	-		MIT1002_01158	0.33	-1.5
1,274,573	-		MIT1002_01158	0.33	+0.2
1,274,605	+		MIT1002_01158	0.36	+0.3
1,274,625	-		MIT1002_01158	0.38	-0.9
1,274,775	+		MIT1002_01158	0.51	-0.9
1,274,830	+		MIT1002_01158	0.56	+0.9
1,274,858	-		MIT1002_01158	0.59	+2.2
1,274,883	-		MIT1002_01158	0.61	+0.4
1,274,924	-		MIT1002_01158	0.64	-0.8
1,274,960	-		MIT1002_01158	0.68	+0.5
1,275,018	+		MIT1002_01158	0.73	+0.4
1,275,044	+		MIT1002_01158	0.75	-0.3
1,275,079	-		MIT1002_01158	0.78	-1.3
1,275,081	+		MIT1002_01158	0.78	-0.8