Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01064

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
1,173,875	-		MIT1002_01063	0.18	-0.2
1,174,041	+		MIT1002_01063	0.32	+0.5
1,174,084	+		MIT1002_01063	0.35	-0.7
1,174,099	-		MIT1002_01063	0.37	-0.5
1,174,117	+		MIT1002_01063	0.38	-0.4
1,174,125	-		MIT1002_01063	0.39	-0.2
1,174,176	+		MIT1002_01063	0.43	+0.8
1,174,201	-		MIT1002_01063	0.45	-0.4
1,174,217	-		MIT1002_01063	0.47	+0.3
1,174,219	+		MIT1002_01063	0.47	-0.5
1,174,219	-		MIT1002_01063	0.47	-0.3
1,174,219	-		MIT1002_01063	0.47	-0.8
1,174,227	-		MIT1002_01063	0.47	+1.3
1,174,227	-		MIT1002_01063	0.47	-0.3
1,174,242	+		MIT1002_01063	0.49	+0.0
1,174,262	+		MIT1002_01063	0.50	-0.2
1,174,301	+		MIT1002_01063	0.54	-2.2
1,174,302	-		MIT1002_01063	0.54	+1.1
1,174,309	-		MIT1002_01063	0.54	-0.2
1,174,314	-		MIT1002_01063	0.55	+0.2
1,174,332	-		MIT1002_01063	0.56	+1.1
1,174,372	+		MIT1002_01063	0.60	-0.5
1,174,372	+		MIT1002_01063	0.60	-1.7
1,174,379	-		MIT1002_01063	0.60	+0.1
1,174,379	-		MIT1002_01063	0.60	+0.5
1,174,380	-		MIT1002_01063	0.60	+1.1
1,174,380	-		MIT1002_01063	0.60	-2.4
1,174,380	-		MIT1002_01063	0.60	+0.3
1,174,380	-		MIT1002_01063	0.60	-0.7
1,174,380	-		MIT1002_01063	0.60	-1.2
1,174,395	-		MIT1002_01063	0.62	+1.5
1,174,423	-		MIT1002_01063	0.64	-0.6
1,174,562	+		MIT1002_01063	0.76	-0.2
1,174,570	-		MIT1002_01063	0.77	+1.5
1,174,583	+		MIT1002_01063	0.78	-1.7
1,174,591	-		MIT1002_01063	0.78	+1.1
1,174,604	+		MIT1002_01063	0.80	+1.1
1,174,696	+		MIT1002_01063	0.87	-0.8
1,174,720	+		MIT1002_01063	0.89	+0.9
1,174,754	+				+1.0
1,174,756	-				-0.4
1,174,762	-				-0.4
1,174,772	-				+0.4
1,174,784	+				-2.1
1,174,953	+				-0.2
1,174,953	+				-0.4
1,174,953	+				+0.9
1,174,961	-				+0.1
1,174,977	-		MIT1002_01064	0.11	+3.7
1,174,990	+		MIT1002_01064	0.12	+1.3
1,174,998	-		MIT1002_01064	0.13	-0.4
1,175,027	-		MIT1002_01064	0.15	-2.1
1,175,028	+		MIT1002_01064	0.15	+0.4
1,175,036	-		MIT1002_01064	0.16	+1.8
1,175,036	-		MIT1002_01064	0.16	+2.7
1,175,051	+		MIT1002_01064	0.17	+1.3
1,175,095	+		MIT1002_01064	0.21	+2.2
1,175,248	+		MIT1002_01064	0.34	-0.4
1,175,301	-		MIT1002_01064	0.38	+0.2
1,175,354	+		MIT1002_01064	0.42	-0.3
1,175,365	+		MIT1002_01064	0.43	-0.3
1,175,421	+		MIT1002_01064	0.48	+0.9
1,175,436	-		MIT1002_01064	0.49	-0.2
1,175,588	-		MIT1002_01064	0.62	+1.5
1,175,597	+		MIT1002_01064	0.63	+0.5
1,175,695	+		MIT1002_01064	0.71	-1.7
1,175,695	+		MIT1002_01064	0.71	+0.1
1,175,730	-		MIT1002_01064	0.74	+0.8
1,175,734	+		MIT1002_01064	0.74	-1.4
1,175,762	+		MIT1002_01064	0.77	+0.3
1,175,826	-		MIT1002_01064	0.82	+0.1
1,175,873	+		MIT1002_01064	0.86	+1.0
1,176,107	-				+1.0
1,176,144	+				-0.2
1,176,171	-				-0.2
1,176,212	+				-0.6
1,176,219	+				-1.4
1,176,300	-		MIT1002_01065	0.25	-0.0
1,176,416	+		MIT1002_01065	0.78	-2.2
1,176,416	+		MIT1002_01065	0.78	-0.2
1,176,424	-		MIT1002_01065	0.82	+0.2
1,176,475	+				+2.3
1,176,631	+		MIT1002_01066	0.17	-0.7
1,176,714	+		MIT1002_01066	0.74	-1.8
1,176,736	-				+0.1
1,176,828	-		MIT1002_01067	0.12	+1.6
1,176,828	-		MIT1002_01067	0.12	-0.8
1,176,842	+		MIT1002_01067	0.14	+0.5
1,176,850	-		MIT1002_01067	0.16	-1.2
1,176,850	-		MIT1002_01067	0.16	+0.5
1,176,892	-		MIT1002_01067	0.24	-1.6
1,176,932	+		MIT1002_01067	0.31	+1.3
1,176,940	-		MIT1002_01067	0.33	-1.2
1,176,940	-		MIT1002_01067	0.33	-0.9
1,176,942	+		MIT1002_01067	0.33	-1.7
1,177,008	-		MIT1002_01067	0.46	-1.0