Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00989

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
1,096,344	-				-2.7
1,096,367	+				+0.5
1,096,374	-				-1.8
1,096,374	-				-0.5
1,096,374	-				-2.5
1,096,409	+		MIT1002_00988	0.11	-2.2
1,096,409	+		MIT1002_00988	0.11	+1.5
1,096,417	-		MIT1002_00988	0.12	-0.5
1,096,417	-		MIT1002_00988	0.12	-2.7
1,096,457	+		MIT1002_00988	0.17	-2.3
1,096,465	-		MIT1002_00988	0.18	-2.0
1,096,490	+		MIT1002_00988	0.21	+0.3
1,096,490	+		MIT1002_00988	0.21	-1.9
1,096,495	+		MIT1002_00988	0.21	-1.7
1,096,498	-		MIT1002_00988	0.22	+0.2
1,096,498	-		MIT1002_00988	0.22	-1.5
1,096,498	-		MIT1002_00988	0.22	-1.1
1,096,559	-		MIT1002_00988	0.29	-1.5
1,096,650	-		MIT1002_00988	0.39	-0.6
1,096,650	-		MIT1002_00988	0.39	-0.7
1,096,650	-		MIT1002_00988	0.39	+0.5
1,096,650	-		MIT1002_00988	0.39	-1.7
1,096,741	+		MIT1002_00988	0.50	-1.1
1,096,741	+		MIT1002_00988	0.50	-2.1
1,096,749	-		MIT1002_00988	0.51	-2.1
1,096,749	-		MIT1002_00988	0.51	-2.9
1,096,751	-		MIT1002_00988	0.51	-0.7
1,096,784	+		MIT1002_00988	0.55	-0.5
1,096,787	-		MIT1002_00988	0.55	+0.2
1,096,830	-		MIT1002_00988	0.60	-1.3
1,096,908	+		MIT1002_00988	0.69	+0.3
1,096,916	+		MIT1002_00988	0.70	-1.1
1,096,916	-		MIT1002_00988	0.70	-3.4
1,096,916	-		MIT1002_00988	0.70	-1.2
1,096,919	-		MIT1002_00988	0.71	-2.2
1,096,947	-		MIT1002_00988	0.74	-1.6
1,096,997	-		MIT1002_00988	0.80	+1.5
1,096,999	-		MIT1002_00988	0.80	-1.6
1,097,027	+		MIT1002_00988	0.83	+0.7
1,097,042	+		MIT1002_00988	0.85	-1.1
1,097,118	-				-0.4
1,097,120	+				-2.5
1,097,129	-				-0.2
1,097,232	-				-1.0
1,097,234	-				+2.0
1,097,239	+				-3.1
1,097,242	-				-0.2
1,097,242	-				+0.2
1,097,259	+				+0.5
1,097,267	-				+0.2
1,097,271	+				-0.4
1,097,278	+				+1.7
1,097,281	+				-0.3
1,097,289	-				+0.3
1,097,289	-				-2.9
1,097,374	+		MIT1002_00989	0.10	-0.9
1,097,374	+		MIT1002_00989	0.10	+2.2
1,097,374	+		MIT1002_00989	0.10	+0.6
1,097,374	+		MIT1002_00989	0.10	-0.5
1,097,374	+		MIT1002_00989	0.10	+0.2
1,097,382	-		MIT1002_00989	0.12	-0.8
1,097,382	-		MIT1002_00989	0.12	+2.9
1,097,382	-		MIT1002_00989	0.12	+1.9
1,097,382	-		MIT1002_00989	0.12	+0.9
1,097,382	-		MIT1002_00989	0.12	+1.2
1,097,382	-		MIT1002_00989	0.12	+0.8
1,097,387	+		MIT1002_00989	0.13	-0.4
1,097,395	-		MIT1002_00989	0.14	+2.5
1,097,395	-		MIT1002_00989	0.14	+1.8
1,097,474	+		MIT1002_00989	0.29	-0.4
1,097,477	+		MIT1002_00989	0.29	-0.6
1,097,479	+		MIT1002_00989	0.30	+10.2
1,097,569	-		MIT1002_00989	0.46	+0.1
1,097,594	+		MIT1002_00989	0.51	+1.2
1,097,594	+		MIT1002_00989	0.51	-0.4
1,097,604	+		MIT1002_00989	0.53	+0.7
1,097,629	-		MIT1002_00989	0.57	+0.8
1,097,656	+		MIT1002_00989	0.62	-0.4
1,097,700	+		MIT1002_00989	0.70	+1.1
1,097,797	-		MIT1002_00989	0.88	+0.1
1,097,862	-				-1.5
1,097,888	-				-1.1
1,097,895	-				+0.8
1,097,898	-				+0.7
1,097,898	-				+0.7
1,097,960	-		MIT1002_00990	0.12	+0.9
1,097,983	+		MIT1002_00990	0.20	-0.1
1,098,003	+		MIT1002_00990	0.26	+0.8
1,098,003	+		MIT1002_00990	0.26	+1.2
1,098,011	-		MIT1002_00990	0.29	-0.9
1,098,064	+		MIT1002_00990	0.46	-2.3
1,098,111	-		MIT1002_00990	0.61	-0.4
1,098,168	+		MIT1002_00990	0.79	+0.5
1,098,273	+				+0.5
1,098,541	-				-1.0
1,098,597	-		MIT1002_00991	0.17	+0.5
1,098,597	-		MIT1002_00991	0.17	+1.5
1,098,603	+		MIT1002_00991	0.19	+1.2
1,098,623	+		MIT1002_00991	0.24	-2.8
1,098,658	-		MIT1002_00991	0.34	-1.8
1,098,697	+		MIT1002_00991	0.45	+0.4
1,098,703	-		MIT1002_00991	0.46	+0.3
1,098,766	+		MIT1002_00991	0.63	+0.2