Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00881 and MIT1002_00882 are separated by 257 nucleotides MIT1002_00882 and MIT1002_00883 overlap by 1 nucleotides MIT1002_00883 and MIT1002_00884 are separated by 17 nucleotides
MIT1002_00881: MIT1002_00881 - Morphology and auto-aggregation control protein, at 973,433 to 974,341
_00881
MIT1002_00882: MIT1002_00882 - Sigma-W factor, at 974,599 to 975,129
_00882
MIT1002_00883: MIT1002_00883 - putative transmembrane transcriptional regulator (anti-sigma factor), at 975,129 to 975,887
_00883
MIT1002_00884: MIT1002_00884 - hypothetical protein, at 975,905 to 976,846
_00884
Position (kb) 975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 974.194 kb on - strand, within MIT1002_00881 at 974.212 kb on - strand, within MIT1002_00881 at 974.232 kb on + strand, within MIT1002_00881 at 974.255 kb on - strand at 974.264 kb on + strand at 974.314 kb on + strand at 974.315 kb on + strand at 974.342 kb on + strand at 974.427 kb on + strand at 974.435 kb on - strand at 974.466 kb on - strand at 974.556 kb on + strand at 974.561 kb on - strand at 974.644 kb on - strand at 974.705 kb on + strand, within MIT1002_00882 at 974.748 kb on - strand, within MIT1002_00882 at 974.794 kb on + strand, within MIT1002_00882 at 974.802 kb on - strand, within MIT1002_00882 at 974.843 kb on + strand, within MIT1002_00882 at 974.853 kb on - strand, within MIT1002_00882 at 974.901 kb on + strand, within MIT1002_00882 at 974.909 kb on - strand, within MIT1002_00882 at 974.949 kb on + strand, within MIT1002_00882 at 974.949 kb on + strand, within MIT1002_00882 at 974.952 kb on - strand, within MIT1002_00882 at 974.957 kb on + strand, within MIT1002_00882 at 974.957 kb on - strand, within MIT1002_00882 at 974.957 kb on - strand, within MIT1002_00882 at 974.957 kb on - strand, within MIT1002_00882 at 974.971 kb on + strand, within MIT1002_00882 at 974.971 kb on + strand, within MIT1002_00882 at 974.978 kb on + strand, within MIT1002_00882 at 975.087 kb on + strand at 975.097 kb on + strand at 975.150 kb on + strand at 975.300 kb on + strand, within MIT1002_00883 at 975.462 kb on - strand, within MIT1002_00883 at 975.574 kb on + strand, within MIT1002_00883 at 975.631 kb on + strand, within MIT1002_00883 at 975.655 kb on - strand, within MIT1002_00883 at 975.670 kb on - strand, within MIT1002_00883 at 975.782 kb on + strand, within MIT1002_00883 at 975.862 kb on + strand at 975.934 kb on + strand at 975.961 kb on + strand at 976.097 kb on + strand, within MIT1002_00884 at 976.194 kb on + strand, within MIT1002_00884 at 976.429 kb on + strand, within MIT1002_00884 at 976.479 kb on + strand, within MIT1002_00884 at 976.672 kb on - strand, within MIT1002_00884 at 976.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 974,194 - MIT1002_00881 0.84 +0.0 974,212 - MIT1002_00881 0.86 +1.9 974,232 + MIT1002_00881 0.88 -0.6 974,255 - +0.2 974,264 + -0.8 974,314 + -1.3 974,315 + +1.5 974,342 + -0.6 974,427 + -1.4 974,435 - +0.8 974,466 - -0.2 974,556 + -0.3 974,561 - +1.3 974,644 - +2.5 974,705 + MIT1002_00882 0.20 -0.6 974,748 - MIT1002_00882 0.28 +0.7 974,794 + MIT1002_00882 0.37 +1.5 974,802 - MIT1002_00882 0.38 +1.3 974,843 + MIT1002_00882 0.46 +0.0 974,853 - MIT1002_00882 0.48 -1.3 974,901 + MIT1002_00882 0.57 +1.0 974,909 - MIT1002_00882 0.58 +2.1 974,949 + MIT1002_00882 0.66 +2.1 974,949 + MIT1002_00882 0.66 +0.0 974,952 - MIT1002_00882 0.66 -0.5 974,957 + MIT1002_00882 0.67 -1.0 974,957 - MIT1002_00882 0.67 -0.4 974,957 - MIT1002_00882 0.67 +0.7 974,957 - MIT1002_00882 0.67 +0.1 974,971 + MIT1002_00882 0.70 +0.1 974,971 + MIT1002_00882 0.70 -0.4 974,978 + MIT1002_00882 0.71 +0.3 975,087 + +2.2 975,097 + -0.4 975,150 + -1.2 975,300 + MIT1002_00883 0.23 -2.9 975,462 - MIT1002_00883 0.44 +0.3 975,574 + MIT1002_00883 0.59 -0.5 975,631 + MIT1002_00883 0.66 -1.1 975,655 - MIT1002_00883 0.69 -0.8 975,670 - MIT1002_00883 0.71 +1.5 975,782 + MIT1002_00883 0.86 -2.0 975,862 + -0.6 975,934 + -0.3 975,961 + -2.6 976,097 + MIT1002_00884 0.20 -1.9 976,194 + MIT1002_00884 0.31 -0.2 976,429 + MIT1002_00884 0.56 -0.7 976,479 + MIT1002_00884 0.61 +0.7 976,672 - MIT1002_00884 0.81 +0.3 976,867 + -0.2
Or see this region's nucleotide sequence