Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00864 and MIT1002_00865 are separated by 222 nucleotides MIT1002_00865 and MIT1002_00866 are separated by 195 nucleotides MIT1002_00866 and MIT1002_00867 are separated by 9 nucleotides
MIT1002_00864: MIT1002_00864 - Fructose-bisphosphate aldolase class 1, at 950,011 to 950,910
_00864
MIT1002_00865: MIT1002_00865 - hypothetical protein, at 951,133 to 951,447
_00865
MIT1002_00866: MIT1002_00866 - Toluene efflux pump periplasmic linker protein TtgA precursor, at 951,643 to 952,728
_00866
MIT1002_00867: MIT1002_00867 - Efflux pump membrane transporter BepE, at 952,738 to 955,923
_00867
Position (kb) 951
952
953 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.905 kb on + strand at 951.075 kb on - strand at 951.077 kb on + strand at 951.085 kb on - strand at 951.085 kb on - strand at 951.149 kb on + strand at 951.286 kb on - strand, within MIT1002_00865 at 951.410 kb on + strand, within MIT1002_00865 at 951.464 kb on - strand at 951.472 kb on - strand at 951.506 kb on - strand at 951.552 kb on + strand at 951.794 kb on + strand, within MIT1002_00866 at 951.806 kb on - strand, within MIT1002_00866 at 951.814 kb on - strand, within MIT1002_00866 at 951.845 kb on + strand, within MIT1002_00866 at 951.878 kb on + strand, within MIT1002_00866 at 951.878 kb on + strand, within MIT1002_00866 at 951.892 kb on + strand, within MIT1002_00866 at 951.931 kb on + strand, within MIT1002_00866 at 951.931 kb on + strand, within MIT1002_00866 at 951.931 kb on + strand, within MIT1002_00866 at 951.939 kb on - strand, within MIT1002_00866 at 951.939 kb on - strand, within MIT1002_00866 at 951.939 kb on - strand, within MIT1002_00866 at 952.065 kb on - strand, within MIT1002_00866 at 952.077 kb on + strand, within MIT1002_00866 at 952.085 kb on - strand, within MIT1002_00866 at 952.149 kb on + strand, within MIT1002_00866 at 952.217 kb on + strand, within MIT1002_00866 at 952.225 kb on - strand, within MIT1002_00866 at 952.241 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.281 kb on - strand, within MIT1002_00866 at 952.288 kb on - strand, within MIT1002_00866 at 952.289 kb on + strand, within MIT1002_00866 at 952.310 kb on + strand, within MIT1002_00866 at 952.321 kb on + strand, within MIT1002_00866 at 952.329 kb on - strand, within MIT1002_00866 at 952.329 kb on - strand, within MIT1002_00866 at 952.383 kb on - strand, within MIT1002_00866 at 952.403 kb on - strand, within MIT1002_00866 at 952.431 kb on - strand, within MIT1002_00866 at 952.530 kb on - strand, within MIT1002_00866 at 952.565 kb on - strand, within MIT1002_00866 at 952.576 kb on - strand, within MIT1002_00866 at 952.612 kb on - strand, within MIT1002_00866 at 952.612 kb on - strand, within MIT1002_00866 at 952.678 kb on - strand at 952.678 kb on - strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.723 kb on + strand at 952.731 kb on - strand at 952.731 kb on - strand at 952.731 kb on - strand at 952.816 kb on + strand at 952.832 kb on + strand at 952.878 kb on + strand at 952.886 kb on - strand at 952.923 kb on + strand at 952.931 kb on - strand at 952.936 kb on - strand at 953.013 kb on - strand at 953.091 kb on + strand, within MIT1002_00867 at 953.091 kb on + strand, within MIT1002_00867 at 953.096 kb on + strand, within MIT1002_00867 at 953.099 kb on - strand, within MIT1002_00867 at 953.099 kb on - strand, within MIT1002_00867 at 953.114 kb on - strand, within MIT1002_00867 at 953.122 kb on - strand, within MIT1002_00867 at 953.130 kb on + strand, within MIT1002_00867 at 953.131 kb on + strand, within MIT1002_00867 at 953.256 kb on - strand, within MIT1002_00867 at 953.393 kb on - strand, within MIT1002_00867 at 953.405 kb on + strand, within MIT1002_00867 at 953.432 kb on - strand, within MIT1002_00867 at 953.614 kb on + strand, within MIT1002_00867 at 953.627 kb on - strand, within MIT1002_00867 at 953.663 kb on - strand, within MIT1002_00867 at 953.664 kb on - strand, within MIT1002_00867
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 950,905 + -1.6 951,075 - +2.0 951,077 + +1.6 951,085 - -0.5 951,085 - -0.3 951,149 + +0.1 951,286 - MIT1002_00865 0.49 +0.0 951,410 + MIT1002_00865 0.88 +0.8 951,464 - -0.4 951,472 - +1.0 951,506 - +1.6 951,552 + +1.0 951,794 + MIT1002_00866 0.14 +1.0 951,806 - MIT1002_00866 0.15 -0.2 951,814 - MIT1002_00866 0.16 -0.5 951,845 + MIT1002_00866 0.19 +0.5 951,878 + MIT1002_00866 0.22 +0.3 951,878 + MIT1002_00866 0.22 +0.0 951,892 + MIT1002_00866 0.23 -0.7 951,931 + MIT1002_00866 0.27 -0.2 951,931 + MIT1002_00866 0.27 +2.5 951,931 + MIT1002_00866 0.27 +2.0 951,939 - MIT1002_00866 0.27 +1.5 951,939 - MIT1002_00866 0.27 +2.6 951,939 - MIT1002_00866 0.27 +0.9 952,065 - MIT1002_00866 0.39 -0.1 952,077 + MIT1002_00866 0.40 -0.4 952,085 - MIT1002_00866 0.41 +0.1 952,149 + MIT1002_00866 0.47 +1.1 952,217 + MIT1002_00866 0.53 -0.2 952,225 - MIT1002_00866 0.54 +0.7 952,241 + MIT1002_00866 0.55 -0.2 952,252 + MIT1002_00866 0.56 +1.7 952,252 + MIT1002_00866 0.56 -1.1 952,252 + MIT1002_00866 0.56 +0.3 952,252 + MIT1002_00866 0.56 -0.4 952,260 - MIT1002_00866 0.57 -0.9 952,260 - MIT1002_00866 0.57 -0.6 952,260 - MIT1002_00866 0.57 -0.0 952,260 - MIT1002_00866 0.57 -1.9 952,260 - MIT1002_00866 0.57 +0.1 952,281 - MIT1002_00866 0.59 -0.4 952,288 - MIT1002_00866 0.59 -0.5 952,289 + MIT1002_00866 0.59 +1.2 952,310 + MIT1002_00866 0.61 +0.7 952,321 + MIT1002_00866 0.62 +0.1 952,329 - MIT1002_00866 0.63 +0.0 952,329 - MIT1002_00866 0.63 +1.9 952,383 - MIT1002_00866 0.68 +1.0 952,403 - MIT1002_00866 0.70 +0.1 952,431 - MIT1002_00866 0.73 +0.4 952,530 - MIT1002_00866 0.82 +0.9 952,565 - MIT1002_00866 0.85 +1.1 952,576 - MIT1002_00866 0.86 +0.0 952,612 - MIT1002_00866 0.89 -0.1 952,612 - MIT1002_00866 0.89 +0.0 952,678 - +2.2 952,678 - -0.2 952,723 + -1.9 952,723 + +1.3 952,723 + +0.3 952,723 + +0.5 952,723 + -1.3 952,723 + -1.0 952,731 - +0.8 952,731 - +1.7 952,731 - +2.2 952,816 + -0.2 952,832 + -1.0 952,878 + +0.3 952,886 - -0.2 952,923 + -1.2 952,931 - +1.3 952,936 - -0.2 953,013 - +0.8 953,091 + MIT1002_00867 0.11 +0.6 953,091 + MIT1002_00867 0.11 +1.9 953,096 + MIT1002_00867 0.11 +1.5 953,099 - MIT1002_00867 0.11 -0.0 953,099 - MIT1002_00867 0.11 -1.0 953,114 - MIT1002_00867 0.12 -0.1 953,122 - MIT1002_00867 0.12 +0.4 953,130 + MIT1002_00867 0.12 -1.3 953,131 + MIT1002_00867 0.12 -1.7 953,256 - MIT1002_00867 0.16 +1.1 953,393 - MIT1002_00867 0.21 +0.9 953,405 + MIT1002_00867 0.21 -0.5 953,432 - MIT1002_00867 0.22 +0.3 953,614 + MIT1002_00867 0.27 +0.1 953,627 - MIT1002_00867 0.28 +0.1 953,663 - MIT1002_00867 0.29 -0.3 953,664 - MIT1002_00867 0.29 +0.7
Or see this region's nucleotide sequence