Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00848

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00846 and MIT1002_00847 are separated by 42 nucleotidesMIT1002_00847 and MIT1002_00848 are separated by 239 nucleotidesMIT1002_00848 and MIT1002_00849 are separated by 85 nucleotides MIT1002_00846: MIT1002_00846 - Major NAD(P)H-flavin oxidoreductase, at 927,328 to 927,984 _00846 MIT1002_00847: MIT1002_00847 - hypothetical protein, at 928,027 to 928,302 _00847 MIT1002_00848: MIT1002_00848 - hypothetical protein, at 928,542 to 928,868 _00848 MIT1002_00849: MIT1002_00849 - bifunctional preprotein translocase subunit SecD/SecF, at 928,954 to 931,521 _00849 Position (kb) 928 929Strain fitness (log2 ratio) -2 -1 0 1 2at 927.557 kb on - strand, within MIT1002_00846at 927.678 kb on + strand, within MIT1002_00846at 927.678 kb on + strand, within MIT1002_00846at 927.713 kb on - strand, within MIT1002_00846at 927.744 kb on - strand, within MIT1002_00846at 927.749 kb on - strand, within MIT1002_00846at 927.753 kb on + strand, within MIT1002_00846at 927.763 kb on + strand, within MIT1002_00846at 927.801 kb on - strand, within MIT1002_00846at 927.801 kb on - strand, within MIT1002_00846at 927.852 kb on + strand, within MIT1002_00846at 927.852 kb on + strand, within MIT1002_00846at 927.852 kb on + strand, within MIT1002_00846at 927.852 kb on + strand, within MIT1002_00846at 927.860 kb on - strand, within MIT1002_00846at 927.862 kb on + strand, within MIT1002_00846at 927.906 kb on + strand, within MIT1002_00846at 927.979 kb on + strandat 928.017 kb on - strandat 928.020 kb on + strandat 928.088 kb on + strand, within MIT1002_00847at 928.184 kb on + strand, within MIT1002_00847at 928.192 kb on - strand, within MIT1002_00847at 928.192 kb on - strand, within MIT1002_00847at 928.195 kb on - strand, within MIT1002_00847at 928.312 kb on + strandat 928.326 kb on - strandat 928.419 kb on + strandat 928.443 kb on - strandat 928.451 kb on - strandat 928.451 kb on - strandat 928.453 kb on - strandat 928.569 kb on - strandat 928.626 kb on - strand, within MIT1002_00848at 928.629 kb on + strand, within MIT1002_00848at 928.637 kb on - strand, within MIT1002_00848at 928.637 kb on - strand, within MIT1002_00848at 928.645 kb on - strand, within MIT1002_00848at 928.670 kb on + strand, within MIT1002_00848at 928.729 kb on + strand, within MIT1002_00848at 928.784 kb on + strand, within MIT1002_00848at 928.784 kb on + strand, within MIT1002_00848at 928.784 kb on + strand, within MIT1002_00848at 928.792 kb on - strand, within MIT1002_00848at 928.801 kb on + strand, within MIT1002_00848at 928.803 kb on + strand, within MIT1002_00848at 928.803 kb on + strand, within MIT1002_00848at 928.804 kb on - strand, within MIT1002_00848at 928.818 kb on + strand, within MIT1002_00848at 928.846 kb on + strandat 928.858 kb on - strandat 928.859 kb on - strandat 928.860 kb on - strandat 929.060 kb on - strandat 929.072 kb on - strandat 929.083 kb on - strandat 929.093 kb on - strandat 929.111 kb on + strandat 929.201 kb on + strandat 929.209 kb on - strandat 929.209 kb on - strandat 929.270 kb on + strand, within MIT1002_00849at 929.280 kb on + strand, within MIT1002_00849at 929.293 kb on - strand, within MIT1002_00849at 929.293 kb on - strand, within MIT1002_00849at 929.305 kb on + strand, within MIT1002_00849at 929.313 kb on - strand, within MIT1002_00849at 929.345 kb on + strand, within MIT1002_00849at 929.353 kb on - strand, within MIT1002_00849at 929.366 kb on + strand, within MIT1002_00849at 929.381 kb on + strand, within MIT1002_00849at 929.381 kb on + strand, within MIT1002_00849at 929.389 kb on - strand, within MIT1002_00849at 929.389 kb on - strand, within MIT1002_00849at 929.389 kb on - strand, within MIT1002_00849at 929.411 kb on - strand, within MIT1002_00849at 929.436 kb on + strand, within MIT1002_00849at 929.444 kb on + strand, within MIT1002_00849at 929.472 kb on - strand, within MIT1002_00849at 929.482 kb on - strand, within MIT1002_00849at 929.543 kb on + strand, within MIT1002_00849at 929.582 kb on - strand, within MIT1002_00849at 929.628 kb on + strand, within MIT1002_00849at 929.636 kb on - strand, within MIT1002_00849at 929.652 kb on + strand, within MIT1002_00849at 929.660 kb on - strand, within MIT1002_00849at 929.661 kb on - strand, within MIT1002_00849at 929.719 kb on + strand, within MIT1002_00849at 929.727 kb on - strand, within MIT1002_00849at 929.776 kb on + strand, within MIT1002_00849at 929.784 kb on + strand, within MIT1002_00849at 929.833 kb on - strand, within MIT1002_00849at 929.860 kb on + strand, within MIT1002_00849

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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927,557 - MIT1002_00846 0.35 +0.4
927,678 + MIT1002_00846 0.53 -0.7
927,678 + MIT1002_00846 0.53 -0.6
927,713 - MIT1002_00846 0.59 +1.5
927,744 - MIT1002_00846 0.63 -2.3
927,749 - MIT1002_00846 0.64 +0.1
927,753 + MIT1002_00846 0.65 +2.6
927,763 + MIT1002_00846 0.66 +0.5
927,801 - MIT1002_00846 0.72 -1.0
927,801 - MIT1002_00846 0.72 +0.1
927,852 + MIT1002_00846 0.80 +0.3
927,852 + MIT1002_00846 0.80 -1.4
927,852 + MIT1002_00846 0.80 -0.9
927,852 + MIT1002_00846 0.80 +0.3
927,860 - MIT1002_00846 0.81 +1.3
927,862 + MIT1002_00846 0.81 -2.7
927,906 + MIT1002_00846 0.88 +0.8
927,979 + +0.7
928,017 - +0.0
928,020 + -0.2
928,088 + MIT1002_00847 0.22 +1.1
928,184 + MIT1002_00847 0.57 +1.8
928,192 - MIT1002_00847 0.60 +0.1
928,192 - MIT1002_00847 0.60 -0.8
928,195 - MIT1002_00847 0.61 -2.1
928,312 + -0.7
928,326 - -0.3
928,419 + -0.1
928,443 - -0.7
928,451 - -2.2
928,451 - -1.2
928,453 - +1.1
928,569 - -0.6
928,626 - MIT1002_00848 0.26 +0.9
928,629 + MIT1002_00848 0.27 +0.4
928,637 - MIT1002_00848 0.29 -1.1
928,637 - MIT1002_00848 0.29 +0.1
928,645 - MIT1002_00848 0.31 -0.2
928,670 + MIT1002_00848 0.39 -1.0
928,729 + MIT1002_00848 0.57 -0.4
928,784 + MIT1002_00848 0.74 -0.8
928,784 + MIT1002_00848 0.74 -1.1
928,784 + MIT1002_00848 0.74 -0.9
928,792 - MIT1002_00848 0.76 -1.3
928,801 + MIT1002_00848 0.79 +1.0
928,803 + MIT1002_00848 0.80 -0.3
928,803 + MIT1002_00848 0.80 +1.5
928,804 - MIT1002_00848 0.80 +1.2
928,818 + MIT1002_00848 0.84 +0.1
928,846 + +0.0
928,858 - -0.2
928,859 - -0.7
928,860 - +0.6
929,060 - +0.0
929,072 - -0.8
929,083 - +0.0
929,093 - -1.7
929,111 + +1.3
929,201 + +1.9
929,209 - -0.9
929,209 - +0.1
929,270 + MIT1002_00849 0.12 -0.7
929,280 + MIT1002_00849 0.13 +0.7
929,293 - MIT1002_00849 0.13 +0.5
929,293 - MIT1002_00849 0.13 -1.4
929,305 + MIT1002_00849 0.14 +0.4
929,313 - MIT1002_00849 0.14 -0.2
929,345 + MIT1002_00849 0.15 -0.7
929,353 - MIT1002_00849 0.16 -0.3
929,366 + MIT1002_00849 0.16 +1.0
929,381 + MIT1002_00849 0.17 +1.0
929,381 + MIT1002_00849 0.17 +1.5
929,389 - MIT1002_00849 0.17 +0.1
929,389 - MIT1002_00849 0.17 -2.0
929,389 - MIT1002_00849 0.17 +0.0
929,411 - MIT1002_00849 0.18 +1.5
929,436 + MIT1002_00849 0.19 -0.0
929,444 + MIT1002_00849 0.19 -0.7
929,472 - MIT1002_00849 0.20 +0.3
929,482 - MIT1002_00849 0.21 -0.1
929,543 + MIT1002_00849 0.23 +0.6
929,582 - MIT1002_00849 0.24 -0.2
929,628 + MIT1002_00849 0.26 -0.7
929,636 - MIT1002_00849 0.27 +1.5
929,652 + MIT1002_00849 0.27 +0.0
929,660 - MIT1002_00849 0.27 -0.1
929,661 - MIT1002_00849 0.28 +1.7
929,719 + MIT1002_00849 0.30 -0.1
929,727 - MIT1002_00849 0.30 +0.2
929,776 + MIT1002_00849 0.32 -1.3
929,784 + MIT1002_00849 0.32 +0.3
929,833 - MIT1002_00849 0.34 +0.0
929,860 + MIT1002_00849 0.35 -0.3

Or see this region's nucleotide sequence