Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00844

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00842 and MIT1002_00843 are separated by 82 nucleotidesMIT1002_00843 and MIT1002_00844 are separated by 255 nucleotidesMIT1002_00844 and MIT1002_00845 are separated by 330 nucleotides MIT1002_00842: MIT1002_00842 - Periplasmic pH-dependent serine endoprotease DegQ precursor, at 922,826 to 924,193 _00842 MIT1002_00843: MIT1002_00843 - hypothetical protein, at 924,276 to 924,710 _00843 MIT1002_00844: MIT1002_00844 - AFG1-like ATPase, at 924,966 to 926,063 _00844 MIT1002_00845: MIT1002_00845 - putative transcriptional regulatory protein YeeN, at 926,394 to 927,116 _00845 Position (kb) 924 925 926 927Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 923.988 kb on + strand, within MIT1002_00842at 923.988 kb on + strand, within MIT1002_00842at 923.998 kb on + strand, within MIT1002_00842at 923.998 kb on + strand, within MIT1002_00842at 923.998 kb on + strand, within MIT1002_00842at 923.998 kb on + strand, within MIT1002_00842at 924.006 kb on - strand, within MIT1002_00842at 924.006 kb on - strand, within MIT1002_00842at 924.006 kb on - strand, within MIT1002_00842at 924.006 kb on - strand, within MIT1002_00842at 924.006 kb on - strand, within MIT1002_00842at 924.006 kb on - strand, within MIT1002_00842at 924.006 kb on - strand, within MIT1002_00842at 924.064 kb on + strandat 924.135 kb on - strandat 924.238 kb on + strandat 924.248 kb on + strandat 924.374 kb on - strand, within MIT1002_00843at 924.381 kb on - strand, within MIT1002_00843at 924.452 kb on + strand, within MIT1002_00843at 924.460 kb on - strand, within MIT1002_00843at 924.530 kb on + strand, within MIT1002_00843at 924.530 kb on + strand, within MIT1002_00843at 924.538 kb on - strand, within MIT1002_00843at 924.539 kb on - strand, within MIT1002_00843at 924.564 kb on - strand, within MIT1002_00843at 924.608 kb on + strand, within MIT1002_00843at 924.608 kb on + strand, within MIT1002_00843at 924.608 kb on + strand, within MIT1002_00843at 924.613 kb on + strand, within MIT1002_00843at 924.627 kb on + strand, within MIT1002_00843at 924.694 kb on + strandat 924.727 kb on + strandat 924.812 kb on - strandat 924.899 kb on - strandat 924.915 kb on + strandat 925.002 kb on - strandat 925.087 kb on - strand, within MIT1002_00844at 925.150 kb on - strand, within MIT1002_00844at 925.152 kb on - strand, within MIT1002_00844at 925.157 kb on - strand, within MIT1002_00844at 925.217 kb on + strand, within MIT1002_00844at 925.281 kb on + strand, within MIT1002_00844at 925.446 kb on - strand, within MIT1002_00844at 925.508 kb on + strand, within MIT1002_00844at 925.508 kb on + strand, within MIT1002_00844at 925.508 kb on + strand, within MIT1002_00844at 925.508 kb on + strand, within MIT1002_00844at 925.508 kb on + strand, within MIT1002_00844at 925.516 kb on - strand, within MIT1002_00844at 925.688 kb on - strand, within MIT1002_00844at 925.697 kb on - strand, within MIT1002_00844at 925.809 kb on - strand, within MIT1002_00844at 925.814 kb on - strand, within MIT1002_00844at 925.870 kb on - strand, within MIT1002_00844at 925.929 kb on - strand, within MIT1002_00844at 925.966 kb on + strandat 925.979 kb on + strandat 925.979 kb on + strandat 926.002 kb on + strandat 926.002 kb on + strandat 926.010 kb on - strandat 926.010 kb on - strandat 926.121 kb on + strandat 926.122 kb on - strandat 926.223 kb on + strandat 926.296 kb on + strandat 926.339 kb on - strandat 926.437 kb on - strandat 926.619 kb on + strand, within MIT1002_00845at 926.627 kb on + strand, within MIT1002_00845at 926.657 kb on - strand, within MIT1002_00845at 926.658 kb on - strand, within MIT1002_00845at 926.713 kb on + strand, within MIT1002_00845at 926.744 kb on - strand, within MIT1002_00845at 926.773 kb on - strand, within MIT1002_00845at 926.896 kb on - strand, within MIT1002_00845at 926.930 kb on + strand, within MIT1002_00845at 926.930 kb on + strand, within MIT1002_00845at 926.945 kb on + strand, within MIT1002_00845at 926.953 kb on - strand, within MIT1002_00845at 926.953 kb on - strand, within MIT1002_00845

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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923,988 + MIT1002_00842 0.85 -1.9
923,988 + MIT1002_00842 0.85 +0.1
923,998 + MIT1002_00842 0.86 -0.8
923,998 + MIT1002_00842 0.86 -2.2
923,998 + MIT1002_00842 0.86 +0.5
923,998 + MIT1002_00842 0.86 +0.0
924,006 - MIT1002_00842 0.86 -1.6
924,006 - MIT1002_00842 0.86 -1.6
924,006 - MIT1002_00842 0.86 +0.7
924,006 - MIT1002_00842 0.86 -1.7
924,006 - MIT1002_00842 0.86 +0.7
924,006 - MIT1002_00842 0.86 -1.9
924,006 - MIT1002_00842 0.86 -4.2
924,064 + +0.5
924,135 - -1.1
924,238 + +0.3
924,248 + -0.3
924,374 - MIT1002_00843 0.23 -2.3
924,381 - MIT1002_00843 0.24 -2.6
924,452 + MIT1002_00843 0.40 -2.8
924,460 - MIT1002_00843 0.42 +1.1
924,530 + MIT1002_00843 0.58 -0.4
924,530 + MIT1002_00843 0.58 -1.6
924,538 - MIT1002_00843 0.60 -2.9
924,539 - MIT1002_00843 0.60 -2.1
924,564 - MIT1002_00843 0.66 -0.6
924,608 + MIT1002_00843 0.76 +1.1
924,608 + MIT1002_00843 0.76 -2.3
924,608 + MIT1002_00843 0.76 -3.6
924,613 + MIT1002_00843 0.77 +0.1
924,627 + MIT1002_00843 0.81 -1.2
924,694 + +0.5
924,727 + -0.3
924,812 - +0.1
924,899 - +0.2
924,915 + +1.0
925,002 - -1.2
925,087 - MIT1002_00844 0.11 -1.1
925,150 - MIT1002_00844 0.17 -1.7
925,152 - MIT1002_00844 0.17 +0.7
925,157 - MIT1002_00844 0.17 -0.1
925,217 + MIT1002_00844 0.23 +0.5
925,281 + MIT1002_00844 0.29 -1.6
925,446 - MIT1002_00844 0.44 +0.3
925,508 + MIT1002_00844 0.49 +0.0
925,508 + MIT1002_00844 0.49 +0.9
925,508 + MIT1002_00844 0.49 +0.7
925,508 + MIT1002_00844 0.49 -1.0
925,508 + MIT1002_00844 0.49 -1.1
925,516 - MIT1002_00844 0.50 -1.9
925,688 - MIT1002_00844 0.66 +0.0
925,697 - MIT1002_00844 0.67 -2.0
925,809 - MIT1002_00844 0.77 -1.9
925,814 - MIT1002_00844 0.77 -2.7
925,870 - MIT1002_00844 0.82 -0.7
925,929 - MIT1002_00844 0.88 -2.4
925,966 + -2.3
925,979 + -1.4
925,979 + -1.1
926,002 + -0.8
926,002 + -2.8
926,010 - +0.3
926,010 - -1.7
926,121 + -2.1
926,122 - +0.0
926,223 + +0.4
926,296 + -0.3
926,339 - -1.4
926,437 - +0.0
926,619 + MIT1002_00845 0.31 +0.7
926,627 + MIT1002_00845 0.32 -0.7
926,657 - MIT1002_00845 0.36 -0.5
926,658 - MIT1002_00845 0.37 +0.1
926,713 + MIT1002_00845 0.44 +1.5
926,744 - MIT1002_00845 0.48 -0.2
926,773 - MIT1002_00845 0.52 -1.9
926,896 - MIT1002_00845 0.69 -2.1
926,930 + MIT1002_00845 0.74 +1.5
926,930 + MIT1002_00845 0.74 -0.2
926,945 + MIT1002_00845 0.76 +0.2
926,953 - MIT1002_00845 0.77 +0.7
926,953 - MIT1002_00845 0.77 +2.1

Or see this region's nucleotide sequence