Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00809 and MIT1002_00810 are separated by 1 nucleotides MIT1002_00810 and MIT1002_00811 are separated by 75 nucleotides MIT1002_00811 and MIT1002_00812 are separated by 298 nucleotides MIT1002_00812 and MIT1002_00813 are separated by 12 nucleotides
MIT1002_00809: MIT1002_00809 - Sensor protein QseC, at 894,991 to 896,280
_00809
MIT1002_00810: MIT1002_00810 - Transcriptional regulatory protein BasR, at 896,282 to 896,947
_00810
MIT1002_00811: MIT1002_00811 - hypothetical protein, at 897,023 to 897,895
_00811
MIT1002_00812: MIT1002_00812 - 50S ribosomal protein L13, at 898,194 to 898,622
_00812
MIT1002_00813: MIT1002_00813 - 30S ribosomal protein S9, at 898,635 to 899,027
_00813
Position (kb) 897
898 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 896.028 kb on - strand, within MIT1002_00809 at 896.028 kb on - strand, within MIT1002_00809 at 896.028 kb on - strand, within MIT1002_00809 at 896.028 kb on - strand, within MIT1002_00809 at 896.051 kb on - strand, within MIT1002_00809 at 896.143 kb on - strand, within MIT1002_00809 at 896.143 kb on - strand, within MIT1002_00809 at 896.143 kb on - strand, within MIT1002_00809 at 896.171 kb on + strand at 896.190 kb on - strand at 896.202 kb on - strand at 896.208 kb on - strand at 896.245 kb on - strand at 896.323 kb on - strand at 896.374 kb on + strand, within MIT1002_00810 at 896.374 kb on + strand, within MIT1002_00810 at 896.441 kb on - strand, within MIT1002_00810 at 896.531 kb on + strand, within MIT1002_00810 at 896.596 kb on - strand, within MIT1002_00810 at 896.596 kb on - strand, within MIT1002_00810 at 896.608 kb on + strand, within MIT1002_00810 at 896.616 kb on - strand, within MIT1002_00810 at 896.644 kb on + strand, within MIT1002_00810 at 896.664 kb on - strand, within MIT1002_00810 at 896.697 kb on + strand, within MIT1002_00810 at 896.720 kb on - strand, within MIT1002_00810 at 896.786 kb on - strand, within MIT1002_00810 at 896.868 kb on + strand, within MIT1002_00810 at 896.896 kb on + strand at 896.904 kb on - strand at 896.912 kb on - strand at 896.936 kb on + strand at 896.936 kb on + strand at 897.013 kb on + strand at 897.013 kb on - strand at 897.020 kb on + strand at 897.070 kb on + strand at 897.076 kb on - strand at 897.105 kb on + strand at 897.175 kb on + strand, within MIT1002_00811 at 897.183 kb on - strand, within MIT1002_00811 at 897.220 kb on - strand, within MIT1002_00811 at 897.229 kb on + strand, within MIT1002_00811 at 897.261 kb on - strand, within MIT1002_00811 at 897.283 kb on + strand, within MIT1002_00811 at 897.288 kb on + strand, within MIT1002_00811 at 897.308 kb on + strand, within MIT1002_00811 at 897.316 kb on + strand, within MIT1002_00811 at 897.316 kb on + strand, within MIT1002_00811 at 897.321 kb on + strand, within MIT1002_00811 at 897.417 kb on - strand, within MIT1002_00811 at 897.423 kb on + strand, within MIT1002_00811 at 897.446 kb on - strand, within MIT1002_00811 at 897.456 kb on + strand, within MIT1002_00811 at 897.458 kb on - strand, within MIT1002_00811 at 897.459 kb on - strand, within MIT1002_00811 at 897.503 kb on + strand, within MIT1002_00811 at 897.531 kb on - strand, within MIT1002_00811 at 897.706 kb on - strand, within MIT1002_00811 at 897.706 kb on - strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.756 kb on + strand, within MIT1002_00811 at 897.783 kb on + strand, within MIT1002_00811 at 897.788 kb on + strand, within MIT1002_00811 at 897.788 kb on + strand, within MIT1002_00811 at 897.796 kb on - strand, within MIT1002_00811 at 897.834 kb on + strand at 897.836 kb on + strand at 897.840 kb on - strand at 897.842 kb on - strand at 897.850 kb on - strand at 897.855 kb on + strand at 897.856 kb on + strand at 897.871 kb on + strand at 897.950 kb on - strand at 897.951 kb on + strand at 897.951 kb on + strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 898.020 kb on + strand at 898.028 kb on - strand at 898.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 896,028 - MIT1002_00809 0.80 -0.2 896,028 - MIT1002_00809 0.80 -0.7 896,028 - MIT1002_00809 0.80 -1.9 896,028 - MIT1002_00809 0.80 -4.1 896,051 - MIT1002_00809 0.82 -1.4 896,143 - MIT1002_00809 0.89 -1.6 896,143 - MIT1002_00809 0.89 +0.3 896,143 - MIT1002_00809 0.89 -1.1 896,171 + -2.6 896,190 - -3.4 896,202 - -0.7 896,208 - -2.3 896,245 - -7.5 896,323 - +0.9 896,374 + MIT1002_00810 0.14 +1.4 896,374 + MIT1002_00810 0.14 -0.2 896,441 - MIT1002_00810 0.24 -0.2 896,531 + MIT1002_00810 0.37 +0.5 896,596 - MIT1002_00810 0.47 -0.4 896,596 - MIT1002_00810 0.47 -0.3 896,608 + MIT1002_00810 0.49 +0.1 896,616 - MIT1002_00810 0.50 +0.6 896,644 + MIT1002_00810 0.54 +1.5 896,664 - MIT1002_00810 0.57 +0.5 896,697 + MIT1002_00810 0.62 -0.3 896,720 - MIT1002_00810 0.66 +0.9 896,786 - MIT1002_00810 0.76 +2.4 896,868 + MIT1002_00810 0.88 +1.5 896,896 + -1.1 896,904 - -1.0 896,912 - +1.5 896,936 + -0.3 896,936 + +0.1 897,013 + -2.4 897,013 - +0.6 897,020 + -0.2 897,070 + +0.9 897,076 - -1.7 897,105 + -1.6 897,175 + MIT1002_00811 0.17 +1.5 897,183 - MIT1002_00811 0.18 +1.4 897,220 - MIT1002_00811 0.23 -0.7 897,229 + MIT1002_00811 0.24 -1.3 897,261 - MIT1002_00811 0.27 +0.2 897,283 + MIT1002_00811 0.30 +0.4 897,288 + MIT1002_00811 0.30 +0.1 897,308 + MIT1002_00811 0.33 +0.0 897,316 + MIT1002_00811 0.34 -0.7 897,316 + MIT1002_00811 0.34 +1.1 897,321 + MIT1002_00811 0.34 -1.6 897,417 - MIT1002_00811 0.45 -1.3 897,423 + MIT1002_00811 0.46 -0.5 897,446 - MIT1002_00811 0.48 -0.2 897,456 + MIT1002_00811 0.50 +0.4 897,458 - MIT1002_00811 0.50 +0.9 897,459 - MIT1002_00811 0.50 +1.4 897,503 + MIT1002_00811 0.55 -1.0 897,531 - MIT1002_00811 0.58 +0.9 897,706 - MIT1002_00811 0.78 -0.8 897,706 - MIT1002_00811 0.78 +0.8 897,739 + MIT1002_00811 0.82 -1.1 897,739 + MIT1002_00811 0.82 +0.0 897,739 + MIT1002_00811 0.82 -0.1 897,739 + MIT1002_00811 0.82 -1.3 897,756 + MIT1002_00811 0.84 +0.5 897,783 + MIT1002_00811 0.87 +0.5 897,788 + MIT1002_00811 0.88 +1.5 897,788 + MIT1002_00811 0.88 +0.3 897,796 - MIT1002_00811 0.89 -0.1 897,834 + +1.0 897,836 + +1.1 897,840 - -0.6 897,842 - +0.2 897,850 - +2.1 897,855 + -1.4 897,856 + +0.0 897,871 + -1.4 897,950 - -0.2 897,951 + -0.8 897,951 + -0.2 897,971 - -0.2 897,971 - -2.0 897,971 - -0.6 897,971 - -1.1 897,971 - +1.1 898,020 + -0.4 898,028 - +1.3 898,081 + +0.5
Or see this region's nucleotide sequence