Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00793 and MIT1002_00794 are separated by 12 nucleotides MIT1002_00794 and MIT1002_00795 overlap by 23 nucleotides
MIT1002_00793: MIT1002_00793 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 877,680 to 879,122
_00793
MIT1002_00794: MIT1002_00794 - GTP pyrophosphokinase, at 879,135 to 881,318
_00794
MIT1002_00795: MIT1002_00795 - Nucleoside triphosphate pyrophosphohydrolase, at 881,296 to 882,252
_00795
Position (kb) 879
880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 878.151 kb on + strand, within MIT1002_00793 at 878.155 kb on + strand, within MIT1002_00793 at 878.195 kb on + strand, within MIT1002_00793 at 878.203 kb on - strand, within MIT1002_00793 at 878.203 kb on - strand, within MIT1002_00793 at 878.212 kb on + strand, within MIT1002_00793 at 878.268 kb on + strand, within MIT1002_00793 at 878.278 kb on + strand, within MIT1002_00793 at 878.278 kb on + strand, within MIT1002_00793 at 878.286 kb on - strand, within MIT1002_00793 at 878.286 kb on - strand, within MIT1002_00793 at 878.317 kb on + strand, within MIT1002_00793 at 878.337 kb on + strand, within MIT1002_00793 at 878.337 kb on - strand, within MIT1002_00793 at 878.339 kb on + strand, within MIT1002_00793 at 878.339 kb on + strand, within MIT1002_00793 at 878.345 kb on - strand, within MIT1002_00793 at 878.347 kb on - strand, within MIT1002_00793 at 878.364 kb on - strand, within MIT1002_00793 at 878.371 kb on + strand, within MIT1002_00793 at 878.392 kb on - strand, within MIT1002_00793 at 878.422 kb on - strand, within MIT1002_00793 at 878.422 kb on - strand, within MIT1002_00793 at 878.423 kb on + strand, within MIT1002_00793 at 878.438 kb on + strand, within MIT1002_00793 at 878.441 kb on - strand, within MIT1002_00793 at 878.574 kb on - strand, within MIT1002_00793 at 878.576 kb on - strand, within MIT1002_00793 at 878.673 kb on - strand, within MIT1002_00793 at 878.673 kb on - strand, within MIT1002_00793 at 878.673 kb on - strand, within MIT1002_00793 at 878.740 kb on + strand, within MIT1002_00793 at 878.748 kb on - strand, within MIT1002_00793 at 878.762 kb on + strand, within MIT1002_00793 at 878.861 kb on + strand, within MIT1002_00793 at 878.893 kb on + strand, within MIT1002_00793 at 878.894 kb on + strand, within MIT1002_00793 at 878.902 kb on - strand, within MIT1002_00793 at 878.902 kb on - strand, within MIT1002_00793 at 878.906 kb on + strand, within MIT1002_00793 at 878.914 kb on - strand, within MIT1002_00793 at 879.014 kb on + strand at 879.015 kb on + strand at 879.063 kb on + strand at 879.081 kb on - strand at 879.131 kb on + strand at 879.139 kb on - strand at 879.139 kb on - strand at 879.155 kb on + strand at 879.155 kb on + strand at 879.160 kb on - strand at 879.163 kb on - strand at 879.164 kb on + strand at 879.183 kb on - strand at 879.194 kb on - strand at 879.196 kb on + strand at 879.240 kb on - strand at 879.254 kb on - strand at 879.305 kb on + strand at 879.325 kb on - strand at 879.335 kb on - strand at 879.335 kb on - strand at 879.351 kb on + strand at 879.351 kb on - strand at 879.359 kb on - strand, within MIT1002_00794 at 879.366 kb on - strand, within MIT1002_00794 at 879.366 kb on - strand, within MIT1002_00794 at 879.470 kb on - strand, within MIT1002_00794 at 879.488 kb on - strand, within MIT1002_00794 at 879.511 kb on + strand, within MIT1002_00794 at 879.544 kb on - strand, within MIT1002_00794 at 879.578 kb on + strand, within MIT1002_00794 at 879.596 kb on + strand, within MIT1002_00794 at 879.604 kb on - strand, within MIT1002_00794 at 879.622 kb on + strand, within MIT1002_00794 at 879.687 kb on - strand, within MIT1002_00794 at 879.702 kb on + strand, within MIT1002_00794 at 879.710 kb on - strand, within MIT1002_00794 at 879.724 kb on + strand, within MIT1002_00794 at 879.724 kb on + strand, within MIT1002_00794 at 879.732 kb on - strand, within MIT1002_00794 at 879.734 kb on - strand, within MIT1002_00794 at 879.794 kb on - strand, within MIT1002_00794 at 879.945 kb on + strand, within MIT1002_00794 at 879.966 kb on + strand, within MIT1002_00794 at 879.974 kb on + strand, within MIT1002_00794 at 880.048 kb on + strand, within MIT1002_00794 at 880.049 kb on + strand, within MIT1002_00794 at 880.055 kb on + strand, within MIT1002_00794 at 880.091 kb on - strand, within MIT1002_00794 at 880.091 kb on - strand, within MIT1002_00794 at 880.157 kb on + strand, within MIT1002_00794 at 880.187 kb on + strand, within MIT1002_00794 at 880.187 kb on + strand, within MIT1002_00794 at 880.195 kb on - strand, within MIT1002_00794 at 880.195 kb on - strand, within MIT1002_00794 at 880.205 kb on - strand, within MIT1002_00794 at 880.320 kb on + strand, within MIT1002_00794 at 880.415 kb on + strand, within MIT1002_00794 at 880.526 kb on - strand, within MIT1002_00794 at 880.586 kb on - strand, within MIT1002_00794 at 880.601 kb on + strand, within MIT1002_00794 at 880.609 kb on - strand, within MIT1002_00794 at 880.609 kb on - strand, within MIT1002_00794 at 880.616 kb on + strand, within MIT1002_00794 at 880.708 kb on - strand, within MIT1002_00794 at 880.722 kb on + strand, within MIT1002_00794 at 880.724 kb on + strand, within MIT1002_00794 at 880.732 kb on - strand, within MIT1002_00794 at 880.732 kb on - strand, within MIT1002_00794 at 880.774 kb on + strand, within MIT1002_00794 at 880.820 kb on - strand, within MIT1002_00794 at 880.838 kb on + strand, within MIT1002_00794 at 880.884 kb on - strand, within MIT1002_00794 at 880.886 kb on + strand, within MIT1002_00794 at 880.894 kb on - strand, within MIT1002_00794 at 880.921 kb on + strand, within MIT1002_00794 at 880.921 kb on + strand, within MIT1002_00794 at 880.975 kb on + strand, within MIT1002_00794 at 880.977 kb on - strand, within MIT1002_00794 at 881.108 kb on + strand at 881.108 kb on + strand at 881.149 kb on - strand at 881.182 kb on + strand at 881.204 kb on + strand at 881.232 kb on + strand at 881.232 kb on + strand at 881.267 kb on - strand at 881.267 kb on - strand at 881.279 kb on + strand at 881.279 kb on + strand at 881.279 kb on + strand at 881.279 kb on + strand at 881.279 kb on + strand at 881.279 kb on + strand at 881.279 kb on + strand at 881.279 kb on + strand at 881.279 kb on + strand at 881.286 kb on + strand at 881.287 kb on - strand at 881.287 kb on - strand at 881.287 kb on - strand at 881.287 kb on - strand at 881.287 kb on - strand at 881.287 kb on - strand at 881.287 kb on - strand at 881.287 kb on - strand at 881.287 kb on - strand at 881.287 kb on - strand at 881.312 kb on + strand at 881.426 kb on + strand, within MIT1002_00795 at 881.434 kb on - strand, within MIT1002_00795 at 881.434 kb on - strand, within MIT1002_00795 at 881.439 kb on - strand, within MIT1002_00795 at 881.528 kb on - strand, within MIT1002_00795 at 881.585 kb on + strand, within MIT1002_00795 at 881.585 kb on + strand, within MIT1002_00795 at 881.606 kb on + strand, within MIT1002_00795 at 881.616 kb on - strand, within MIT1002_00795 at 881.664 kb on + strand, within MIT1002_00795 at 881.714 kb on - strand, within MIT1002_00795 at 881.855 kb on + strand, within MIT1002_00795 at 881.863 kb on - strand, within MIT1002_00795 at 881.956 kb on + strand, within MIT1002_00795 at 881.994 kb on - strand, within MIT1002_00795 at 882.089 kb on - strand, within MIT1002_00795 at 882.147 kb on - strand, within MIT1002_00795 at 882.147 kb on - strand, within MIT1002_00795 at 882.147 kb on - strand, within MIT1002_00795 at 882.155 kb on + strand, within MIT1002_00795 at 882.263 kb on - strand at 882.269 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 878,151 + MIT1002_00793 0.33 +0.6 878,155 + MIT1002_00793 0.33 -0.0 878,195 + MIT1002_00793 0.36 +1.7 878,203 - MIT1002_00793 0.36 -1.9 878,203 - MIT1002_00793 0.36 +0.5 878,212 + MIT1002_00793 0.37 +1.0 878,268 + MIT1002_00793 0.41 +1.6 878,278 + MIT1002_00793 0.41 +0.7 878,278 + MIT1002_00793 0.41 -0.6 878,286 - MIT1002_00793 0.42 +0.1 878,286 - MIT1002_00793 0.42 +0.1 878,317 + MIT1002_00793 0.44 -0.5 878,337 + MIT1002_00793 0.46 +0.9 878,337 - MIT1002_00793 0.46 -1.3 878,339 + MIT1002_00793 0.46 +0.0 878,339 + MIT1002_00793 0.46 +1.5 878,345 - MIT1002_00793 0.46 +0.0 878,347 - MIT1002_00793 0.46 +0.8 878,364 - MIT1002_00793 0.47 +0.3 878,371 + MIT1002_00793 0.48 +1.3 878,392 - MIT1002_00793 0.49 -0.2 878,422 - MIT1002_00793 0.51 +1.1 878,422 - MIT1002_00793 0.51 -0.1 878,423 + MIT1002_00793 0.51 +1.0 878,438 + MIT1002_00793 0.53 +1.5 878,441 - MIT1002_00793 0.53 -1.1 878,574 - MIT1002_00793 0.62 +0.3 878,576 - MIT1002_00793 0.62 -1.7 878,673 - MIT1002_00793 0.69 -0.4 878,673 - MIT1002_00793 0.69 +0.2 878,673 - MIT1002_00793 0.69 +0.1 878,740 + MIT1002_00793 0.73 -1.7 878,748 - MIT1002_00793 0.74 +0.1 878,762 + MIT1002_00793 0.75 -0.3 878,861 + MIT1002_00793 0.82 -1.0 878,893 + MIT1002_00793 0.84 -0.6 878,894 + MIT1002_00793 0.84 +0.1 878,902 - MIT1002_00793 0.85 -0.8 878,902 - MIT1002_00793 0.85 +0.0 878,906 + MIT1002_00793 0.85 -0.8 878,914 - MIT1002_00793 0.86 +1.2 879,014 + +0.1 879,015 + +2.7 879,063 + +0.5 879,081 - -0.4 879,131 + +2.5 879,139 - -1.0 879,139 - -1.3 879,155 + -2.5 879,155 + -2.1 879,160 - -1.2 879,163 - -2.0 879,164 + +0.5 879,183 - -2.3 879,194 - -1.7 879,196 + -0.9 879,240 - -0.7 879,254 - -2.8 879,305 + -1.5 879,325 - -0.2 879,335 - -2.3 879,335 - +1.5 879,351 + -2.0 879,351 - -1.8 879,359 - MIT1002_00794 0.10 +0.3 879,366 - MIT1002_00794 0.11 -0.3 879,366 - MIT1002_00794 0.11 -0.3 879,470 - MIT1002_00794 0.15 -2.8 879,488 - MIT1002_00794 0.16 -3.4 879,511 + MIT1002_00794 0.17 +0.1 879,544 - MIT1002_00794 0.19 -0.9 879,578 + MIT1002_00794 0.20 -1.5 879,596 + MIT1002_00794 0.21 -1.3 879,604 - MIT1002_00794 0.21 +0.9 879,622 + MIT1002_00794 0.22 -1.0 879,687 - MIT1002_00794 0.25 -0.9 879,702 + MIT1002_00794 0.26 -1.9 879,710 - MIT1002_00794 0.26 -2.3 879,724 + MIT1002_00794 0.27 -2.6 879,724 + MIT1002_00794 0.27 -1.1 879,732 - MIT1002_00794 0.27 -1.2 879,734 - MIT1002_00794 0.27 -2.2 879,794 - MIT1002_00794 0.30 -0.9 879,945 + MIT1002_00794 0.37 +0.3 879,966 + MIT1002_00794 0.38 +0.5 879,974 + MIT1002_00794 0.38 +0.3 880,048 + MIT1002_00794 0.42 -2.6 880,049 + MIT1002_00794 0.42 -1.3 880,055 + MIT1002_00794 0.42 -0.3 880,091 - MIT1002_00794 0.44 +0.5 880,091 - MIT1002_00794 0.44 -1.6 880,157 + MIT1002_00794 0.47 -0.9 880,187 + MIT1002_00794 0.48 -1.8 880,187 + MIT1002_00794 0.48 -2.7 880,195 - MIT1002_00794 0.49 -1.6 880,195 - MIT1002_00794 0.49 -0.8 880,205 - MIT1002_00794 0.49 -0.6 880,320 + MIT1002_00794 0.54 +0.9 880,415 + MIT1002_00794 0.59 -0.3 880,526 - MIT1002_00794 0.64 -0.7 880,586 - MIT1002_00794 0.66 -1.8 880,601 + MIT1002_00794 0.67 -2.0 880,609 - MIT1002_00794 0.67 -0.6 880,609 - MIT1002_00794 0.67 -0.1 880,616 + MIT1002_00794 0.68 -0.9 880,708 - MIT1002_00794 0.72 -1.1 880,722 + MIT1002_00794 0.73 -1.1 880,724 + MIT1002_00794 0.73 -1.8 880,732 - MIT1002_00794 0.73 -2.3 880,732 - MIT1002_00794 0.73 -0.1 880,774 + MIT1002_00794 0.75 -1.3 880,820 - MIT1002_00794 0.77 -2.2 880,838 + MIT1002_00794 0.78 -1.9 880,884 - MIT1002_00794 0.80 -1.0 880,886 + MIT1002_00794 0.80 -1.8 880,894 - MIT1002_00794 0.81 -0.6 880,921 + MIT1002_00794 0.82 -2.4 880,921 + MIT1002_00794 0.82 -1.3 880,975 + MIT1002_00794 0.84 -2.9 880,977 - MIT1002_00794 0.84 +0.0 881,108 + +0.7 881,108 + +1.1 881,149 - -2.3 881,182 + +1.1 881,204 + -0.3 881,232 + -2.3 881,232 + -0.5 881,267 - -2.2 881,267 - -0.5 881,279 + -2.7 881,279 + +0.9 881,279 + -1.7 881,279 + -2.1 881,279 + -0.5 881,279 + -0.4 881,279 + +0.3 881,279 + -2.5 881,279 + -1.6 881,286 + -2.2 881,287 - -0.2 881,287 - -0.6 881,287 - -1.0 881,287 - -2.0 881,287 - +0.7 881,287 - -2.0 881,287 - -1.5 881,287 - -1.4 881,287 - -2.0 881,287 - +0.3 881,312 + +0.9 881,426 + MIT1002_00795 0.14 -0.3 881,434 - MIT1002_00795 0.14 +0.9 881,434 - MIT1002_00795 0.14 -1.6 881,439 - MIT1002_00795 0.15 -0.9 881,528 - MIT1002_00795 0.24 -0.3 881,585 + MIT1002_00795 0.30 +0.7 881,585 + MIT1002_00795 0.30 +1.6 881,606 + MIT1002_00795 0.32 -1.6 881,616 - MIT1002_00795 0.33 -0.6 881,664 + MIT1002_00795 0.38 -0.9 881,714 - MIT1002_00795 0.44 +0.7 881,855 + MIT1002_00795 0.58 +1.0 881,863 - MIT1002_00795 0.59 +1.1 881,956 + MIT1002_00795 0.69 -0.0 881,994 - MIT1002_00795 0.73 +0.0 882,089 - MIT1002_00795 0.83 +1.1 882,147 - MIT1002_00795 0.89 +2.9 882,147 - MIT1002_00795 0.89 +0.5 882,147 - MIT1002_00795 0.89 +0.5 882,155 + MIT1002_00795 0.90 +2.4 882,263 - -0.4 882,269 + +2.7
Or see this region's nucleotide sequence