Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00773

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00771 and MIT1002_00772 are separated by 6 nucleotidesMIT1002_00772 and MIT1002_00773 are separated by 145 nucleotidesMIT1002_00773 and MIT1002_00774 are separated by 360 nucleotides MIT1002_00771: MIT1002_00771 - Ferri-bacillibactin esterase BesA, at 852,518 to 853,699 _00771 MIT1002_00772: MIT1002_00772 - hypothetical protein, at 853,706 to 853,990 _00772 MIT1002_00773: MIT1002_00773 - DNA ligase, at 854,136 to 855,089 _00773 MIT1002_00774: MIT1002_00774 - Aconitate hydratase 2, at 855,450 to 858,062 _00774 Position (kb) 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 853.154 kb on - strand, within MIT1002_00771at 853.247 kb on - strand, within MIT1002_00771at 853.342 kb on - strand, within MIT1002_00771at 853.349 kb on + strand, within MIT1002_00771at 853.352 kb on - strand, within MIT1002_00771at 853.374 kb on + strand, within MIT1002_00771at 853.509 kb on - strand, within MIT1002_00771at 853.549 kb on - strand, within MIT1002_00771at 853.556 kb on + strand, within MIT1002_00771at 853.563 kb on + strand, within MIT1002_00771at 853.571 kb on - strand, within MIT1002_00771at 853.624 kb on + strandat 853.624 kb on + strandat 853.659 kb on - strandat 853.659 kb on - strandat 853.781 kb on - strand, within MIT1002_00772at 853.781 kb on - strand, within MIT1002_00772at 853.785 kb on - strand, within MIT1002_00772at 853.808 kb on + strand, within MIT1002_00772at 853.824 kb on + strand, within MIT1002_00772at 853.832 kb on - strand, within MIT1002_00772at 853.858 kb on + strand, within MIT1002_00772at 853.866 kb on - strand, within MIT1002_00772at 853.866 kb on - strand, within MIT1002_00772at 853.867 kb on - strand, within MIT1002_00772at 853.879 kb on + strand, within MIT1002_00772at 853.985 kb on + strandat 854.062 kb on - strandat 854.111 kb on + strandat 854.113 kb on - strandat 854.119 kb on - strandat 854.119 kb on - strandat 854.138 kb on - strandat 854.174 kb on - strandat 854.215 kb on - strandat 854.224 kb on + strandat 854.231 kb on - strandat 854.231 kb on - strandat 854.326 kb on - strand, within MIT1002_00773at 854.331 kb on + strand, within MIT1002_00773at 854.334 kb on - strand, within MIT1002_00773at 854.414 kb on + strand, within MIT1002_00773at 854.425 kb on + strand, within MIT1002_00773at 854.449 kb on + strand, within MIT1002_00773at 854.459 kb on + strand, within MIT1002_00773at 854.531 kb on + strand, within MIT1002_00773at 854.610 kb on + strand, within MIT1002_00773at 854.631 kb on + strand, within MIT1002_00773at 854.639 kb on + strand, within MIT1002_00773at 854.680 kb on + strand, within MIT1002_00773at 854.768 kb on - strand, within MIT1002_00773at 854.769 kb on - strand, within MIT1002_00773at 854.789 kb on + strand, within MIT1002_00773at 854.789 kb on + strand, within MIT1002_00773at 854.789 kb on + strand, within MIT1002_00773at 854.795 kb on - strand, within MIT1002_00773at 854.797 kb on - strand, within MIT1002_00773at 854.816 kb on + strand, within MIT1002_00773at 854.823 kb on + strand, within MIT1002_00773at 855.001 kb on + strandat 855.001 kb on + strandat 855.001 kb on + strandat 855.001 kb on + strandat 855.001 kb on + strandat 855.009 kb on - strandat 855.009 kb on - strandat 855.049 kb on - strandat 855.056 kb on - strandat 855.058 kb on + strandat 855.059 kb on + strandat 855.067 kb on - strandat 855.083 kb on - strandat 855.132 kb on - strandat 855.174 kb on + strandat 855.400 kb on + strandat 855.428 kb on + strandat 855.512 kb on + strandat 855.567 kb on + strandat 855.670 kb on + strandat 855.677 kb on - strandat 855.679 kb on + strandat 855.706 kb on + strandat 855.735 kb on + strand, within MIT1002_00774at 855.735 kb on + strand, within MIT1002_00774at 855.735 kb on + strand, within MIT1002_00774at 855.743 kb on - strand, within MIT1002_00774at 855.765 kb on + strand, within MIT1002_00774at 855.839 kb on - strand, within MIT1002_00774at 855.980 kb on - strand, within MIT1002_00774at 856.011 kb on - strand, within MIT1002_00774at 856.071 kb on + strand, within MIT1002_00774at 856.087 kb on + strand, within MIT1002_00774

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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853,154 - MIT1002_00771 0.54 -0.8
853,247 - MIT1002_00771 0.62 -1.0
853,342 - MIT1002_00771 0.70 -1.0
853,349 + MIT1002_00771 0.70 -0.3
853,352 - MIT1002_00771 0.71 +0.0
853,374 + MIT1002_00771 0.72 -2.5
853,509 - MIT1002_00771 0.84 +0.6
853,549 - MIT1002_00771 0.87 -3.4
853,556 + MIT1002_00771 0.88 -0.2
853,563 + MIT1002_00771 0.88 +1.2
853,571 - MIT1002_00771 0.89 +0.7
853,624 + +0.5
853,624 + +2.5
853,659 - +0.0
853,659 - -0.9
853,781 - MIT1002_00772 0.26 +1.5
853,781 - MIT1002_00772 0.26 +0.0
853,785 - MIT1002_00772 0.28 +0.3
853,808 + MIT1002_00772 0.36 -0.8
853,824 + MIT1002_00772 0.41 +1.0
853,832 - MIT1002_00772 0.44 +1.0
853,858 + MIT1002_00772 0.53 -0.9
853,866 - MIT1002_00772 0.56 -0.8
853,866 - MIT1002_00772 0.56 +0.1
853,867 - MIT1002_00772 0.56 +1.7
853,879 + MIT1002_00772 0.61 -2.1
853,985 + +0.8
854,062 - +0.1
854,111 + -0.2
854,113 - +1.1
854,119 - -1.8
854,119 - -0.3
854,138 - -1.1
854,174 - -0.9
854,215 - +0.2
854,224 + +1.9
854,231 - -0.2
854,231 - +0.5
854,326 - MIT1002_00773 0.20 +2.2
854,331 + MIT1002_00773 0.20 -0.5
854,334 - MIT1002_00773 0.21 -1.9
854,414 + MIT1002_00773 0.29 +0.4
854,425 + MIT1002_00773 0.30 +2.1
854,449 + MIT1002_00773 0.33 +0.9
854,459 + MIT1002_00773 0.34 +0.7
854,531 + MIT1002_00773 0.41 +0.9
854,610 + MIT1002_00773 0.50 -2.2
854,631 + MIT1002_00773 0.52 +1.2
854,639 + MIT1002_00773 0.53 +1.5
854,680 + MIT1002_00773 0.57 +2.5
854,768 - MIT1002_00773 0.66 +1.0
854,769 - MIT1002_00773 0.66 +0.7
854,789 + MIT1002_00773 0.68 -0.5
854,789 + MIT1002_00773 0.68 -1.0
854,789 + MIT1002_00773 0.68 +0.3
854,795 - MIT1002_00773 0.69 +0.7
854,797 - MIT1002_00773 0.69 +0.4
854,816 + MIT1002_00773 0.71 -1.5
854,823 + MIT1002_00773 0.72 -0.6
855,001 + +0.1
855,001 + -2.1
855,001 + -2.1
855,001 + +0.4
855,001 + -2.5
855,009 - -0.0
855,009 - -1.3
855,049 - -0.3
855,056 - +0.6
855,058 + -0.7
855,059 + +0.6
855,067 - -1.5
855,083 - +0.0
855,132 - -0.2
855,174 + -0.3
855,400 + +0.6
855,428 + +0.1
855,512 + -0.6
855,567 + +1.1
855,670 + +2.7
855,677 - +1.5
855,679 + +1.7
855,706 + +1.0
855,735 + MIT1002_00774 0.11 +0.5
855,735 + MIT1002_00774 0.11 -0.4
855,735 + MIT1002_00774 0.11 +0.7
855,743 - MIT1002_00774 0.11 -0.2
855,765 + MIT1002_00774 0.12 +1.1
855,839 - MIT1002_00774 0.15 -0.7
855,980 - MIT1002_00774 0.20 +0.2
856,011 - MIT1002_00774 0.21 +0.1
856,071 + MIT1002_00774 0.24 -0.9
856,087 + MIT1002_00774 0.24 +0.7

Or see this region's nucleotide sequence