Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00767 and MIT1002_00768 are separated by 399 nucleotides MIT1002_00768 and MIT1002_00769 are separated by 104 nucleotides
MIT1002_00767: MIT1002_00767 - Soluble aldose sugar dehydrogenase YliI precursor, at 844,686 to 845,912
_00767
MIT1002_00768: MIT1002_00768 - Aconitate hydratase 2, at 846,312 to 849,122
_00768
MIT1002_00769: MIT1002_00769 - Transposase, at 849,227 to 850,423
_00769
Position (kb) 846
847
848
849
850 Strain fitness (log2 ratio) -2
-1
0
1
2 at 845.322 kb on - strand, within MIT1002_00767 at 845.372 kb on - strand, within MIT1002_00767 at 845.391 kb on + strand, within MIT1002_00767 at 845.434 kb on + strand, within MIT1002_00767 at 845.451 kb on + strand, within MIT1002_00767 at 845.451 kb on + strand, within MIT1002_00767 at 845.452 kb on - strand, within MIT1002_00767 at 845.459 kb on - strand, within MIT1002_00767 at 845.459 kb on - strand, within MIT1002_00767 at 845.503 kb on + strand, within MIT1002_00767 at 845.511 kb on - strand, within MIT1002_00767 at 845.562 kb on + strand, within MIT1002_00767 at 845.625 kb on - strand, within MIT1002_00767 at 845.716 kb on - strand, within MIT1002_00767 at 845.756 kb on + strand, within MIT1002_00767 at 845.764 kb on - strand, within MIT1002_00767 at 845.775 kb on + strand, within MIT1002_00767 at 845.783 kb on - strand, within MIT1002_00767 at 846.167 kb on + strand at 846.181 kb on + strand at 846.184 kb on - strand at 846.277 kb on - strand at 846.374 kb on + strand at 846.375 kb on - strand at 846.391 kb on + strand at 846.689 kb on - strand, within MIT1002_00768 at 846.789 kb on + strand, within MIT1002_00768 at 847.028 kb on + strand, within MIT1002_00768 at 847.036 kb on - strand, within MIT1002_00768 at 847.063 kb on + strand, within MIT1002_00768 at 847.073 kb on + strand, within MIT1002_00768 at 847.078 kb on - strand, within MIT1002_00768 at 847.300 kb on - strand, within MIT1002_00768 at 847.419 kb on - strand, within MIT1002_00768 at 847.484 kb on + strand, within MIT1002_00768 at 847.518 kb on + strand, within MIT1002_00768 at 847.526 kb on - strand, within MIT1002_00768 at 847.637 kb on + strand, within MIT1002_00768 at 847.647 kb on + strand, within MIT1002_00768 at 847.741 kb on - strand, within MIT1002_00768 at 847.939 kb on - strand, within MIT1002_00768 at 847.939 kb on - strand, within MIT1002_00768 at 848.015 kb on - strand, within MIT1002_00768 at 848.017 kb on - strand, within MIT1002_00768 at 848.058 kb on - strand, within MIT1002_00768 at 848.177 kb on - strand, within MIT1002_00768 at 848.192 kb on - strand, within MIT1002_00768 at 848.422 kb on - strand, within MIT1002_00768 at 848.432 kb on - strand, within MIT1002_00768 at 848.501 kb on + strand, within MIT1002_00768 at 848.765 kb on + strand, within MIT1002_00768 at 848.779 kb on - strand, within MIT1002_00768 at 848.812 kb on + strand, within MIT1002_00768 at 848.820 kb on - strand, within MIT1002_00768 at 848.908 kb on + strand at 848.933 kb on + strand at 849.004 kb on + strand at 849.017 kb on - strand at 849.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 845,322 - MIT1002_00767 0.52 -0.1 845,372 - MIT1002_00767 0.56 +0.7 845,391 + MIT1002_00767 0.57 +0.7 845,434 + MIT1002_00767 0.61 -0.1 845,451 + MIT1002_00767 0.62 -1.1 845,451 + MIT1002_00767 0.62 +0.9 845,452 - MIT1002_00767 0.62 +1.1 845,459 - MIT1002_00767 0.63 -0.6 845,459 - MIT1002_00767 0.63 +0.6 845,503 + MIT1002_00767 0.67 -0.5 845,511 - MIT1002_00767 0.67 +1.5 845,562 + MIT1002_00767 0.71 -1.1 845,625 - MIT1002_00767 0.77 +0.7 845,716 - MIT1002_00767 0.84 -2.5 845,756 + MIT1002_00767 0.87 +0.2 845,764 - MIT1002_00767 0.88 +0.3 845,775 + MIT1002_00767 0.89 +1.5 845,783 - MIT1002_00767 0.89 -0.8 846,167 + -2.0 846,181 + -1.0 846,184 - +0.1 846,277 - -0.7 846,374 + +0.1 846,375 - -1.5 846,391 + -0.5 846,689 - MIT1002_00768 0.13 -1.2 846,789 + MIT1002_00768 0.17 +1.1 847,028 + MIT1002_00768 0.25 -0.2 847,036 - MIT1002_00768 0.26 -1.0 847,063 + MIT1002_00768 0.27 -0.1 847,073 + MIT1002_00768 0.27 +0.9 847,078 - MIT1002_00768 0.27 -0.6 847,300 - MIT1002_00768 0.35 +0.3 847,419 - MIT1002_00768 0.39 -1.9 847,484 + MIT1002_00768 0.42 +0.7 847,518 + MIT1002_00768 0.43 -2.3 847,526 - MIT1002_00768 0.43 -1.1 847,637 + MIT1002_00768 0.47 -0.4 847,647 + MIT1002_00768 0.47 -2.7 847,741 - MIT1002_00768 0.51 -0.2 847,939 - MIT1002_00768 0.58 +0.9 847,939 - MIT1002_00768 0.58 -1.7 848,015 - MIT1002_00768 0.61 -1.8 848,017 - MIT1002_00768 0.61 +2.2 848,058 - MIT1002_00768 0.62 -0.8 848,177 - MIT1002_00768 0.66 +1.0 848,192 - MIT1002_00768 0.67 +1.1 848,422 - MIT1002_00768 0.75 -0.3 848,432 - MIT1002_00768 0.75 +0.9 848,501 + MIT1002_00768 0.78 -0.2 848,765 + MIT1002_00768 0.87 -0.5 848,779 - MIT1002_00768 0.88 -1.0 848,812 + MIT1002_00768 0.89 -1.1 848,820 - MIT1002_00768 0.89 -1.3 848,908 + +1.0 848,933 + -1.9 849,004 + -0.6 849,017 - -0.7 849,033 - -1.3
Or see this region's nucleotide sequence