Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00646 and MIT1002_00647 are separated by 113 nucleotides MIT1002_00647 and MIT1002_00648 are separated by 96 nucleotides MIT1002_00648 and MIT1002_00649 are separated by 3 nucleotides MIT1002_00649 and MIT1002_00650 are separated by 4 nucleotides
MIT1002_00646: MIT1002_00646 - Methyl-directed mismatch repair protein, at 701,410 to 702,087
_00646
MIT1002_00647: MIT1002_00647 - RNA pyrophosphohydrolase, at 702,201 to 702,743
_00647
MIT1002_00648: MIT1002_00648 - Phosphoenolpyruvate-protein phosphotransferase, at 702,840 to 705,158
_00648
MIT1002_00649: MIT1002_00649 - Sulfite exporter TauE/SafE, at 705,162 to 705,968
_00649
MIT1002_00650: MIT1002_00650 - Prolipoprotein diacylglyceryl transferase, at 705,973 to 706,785
_00650
Position (kb) 702
703
704
705
706 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 701.885 kb on - strand, within MIT1002_00646 at 701.887 kb on + strand, within MIT1002_00646 at 702.169 kb on + strand at 702.181 kb on - strand at 702.236 kb on - strand at 702.287 kb on - strand, within MIT1002_00647 at 702.305 kb on - strand, within MIT1002_00647 at 702.421 kb on + strand, within MIT1002_00647 at 702.629 kb on + strand, within MIT1002_00647 at 702.632 kb on - strand, within MIT1002_00647 at 702.677 kb on + strand, within MIT1002_00647 at 702.677 kb on + strand, within MIT1002_00647 at 702.677 kb on + strand, within MIT1002_00647 at 702.682 kb on + strand, within MIT1002_00647 at 702.685 kb on - strand, within MIT1002_00647 at 702.690 kb on - strand at 702.690 kb on - strand at 702.690 kb on - strand at 702.768 kb on + strand at 702.776 kb on - strand at 702.776 kb on - strand at 702.783 kb on + strand at 702.786 kb on - strand at 702.791 kb on - strand at 702.862 kb on + strand at 702.930 kb on - strand at 702.932 kb on + strand at 702.932 kb on + strand at 702.932 kb on + strand at 702.932 kb on + strand at 702.940 kb on - strand at 702.940 kb on - strand at 702.982 kb on + strand at 702.982 kb on + strand at 702.996 kb on + strand at 703.038 kb on + strand at 703.075 kb on + strand, within MIT1002_00648 at 703.184 kb on + strand, within MIT1002_00648 at 703.300 kb on + strand, within MIT1002_00648 at 703.341 kb on - strand, within MIT1002_00648 at 703.373 kb on + strand, within MIT1002_00648 at 703.384 kb on - strand, within MIT1002_00648 at 703.427 kb on + strand, within MIT1002_00648 at 703.441 kb on - strand, within MIT1002_00648 at 703.443 kb on + strand, within MIT1002_00648 at 703.443 kb on - strand, within MIT1002_00648 at 703.540 kb on - strand, within MIT1002_00648 at 703.555 kb on - strand, within MIT1002_00648 at 703.627 kb on - strand, within MIT1002_00648 at 703.741 kb on - strand, within MIT1002_00648 at 703.759 kb on - strand, within MIT1002_00648 at 703.933 kb on - strand, within MIT1002_00648 at 703.979 kb on + strand, within MIT1002_00648 at 703.979 kb on + strand, within MIT1002_00648 at 703.986 kb on + strand, within MIT1002_00648 at 703.987 kb on - strand, within MIT1002_00648 at 704.012 kb on - strand, within MIT1002_00648 at 704.051 kb on + strand, within MIT1002_00648 at 704.080 kb on + strand, within MIT1002_00648 at 704.180 kb on - strand, within MIT1002_00648 at 704.271 kb on + strand, within MIT1002_00648 at 704.272 kb on + strand, within MIT1002_00648 at 704.272 kb on + strand, within MIT1002_00648 at 704.279 kb on - strand, within MIT1002_00648 at 704.280 kb on - strand, within MIT1002_00648 at 704.280 kb on - strand, within MIT1002_00648 at 704.287 kb on - strand, within MIT1002_00648 at 704.419 kb on + strand, within MIT1002_00648 at 704.424 kb on + strand, within MIT1002_00648 at 704.479 kb on + strand, within MIT1002_00648 at 704.485 kb on + strand, within MIT1002_00648 at 704.493 kb on - strand, within MIT1002_00648 at 704.516 kb on + strand, within MIT1002_00648 at 704.539 kb on + strand, within MIT1002_00648 at 704.544 kb on + strand, within MIT1002_00648 at 704.547 kb on - strand, within MIT1002_00648 at 704.547 kb on - strand, within MIT1002_00648 at 704.552 kb on - strand, within MIT1002_00648 at 704.603 kb on - strand, within MIT1002_00648 at 704.665 kb on - strand, within MIT1002_00648 at 704.676 kb on - strand, within MIT1002_00648 at 704.806 kb on - strand, within MIT1002_00648 at 704.834 kb on - strand, within MIT1002_00648 at 704.964 kb on + strand at 704.997 kb on - strand at 704.997 kb on - strand at 705.040 kb on + strand at 705.043 kb on - strand at 705.046 kb on + strand at 705.070 kb on + strand at 705.084 kb on + strand at 705.122 kb on - strand at 705.122 kb on - strand at 705.183 kb on + strand at 705.183 kb on - strand at 705.191 kb on - strand at 705.288 kb on + strand, within MIT1002_00649 at 705.305 kb on - strand, within MIT1002_00649 at 705.403 kb on - strand, within MIT1002_00649 at 705.419 kb on + strand, within MIT1002_00649 at 705.419 kb on + strand, within MIT1002_00649 at 705.427 kb on - strand, within MIT1002_00649 at 705.427 kb on - strand, within MIT1002_00649 at 705.429 kb on + strand, within MIT1002_00649 at 705.429 kb on + strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.494 kb on + strand, within MIT1002_00649 at 705.494 kb on + strand, within MIT1002_00649 at 705.502 kb on - strand, within MIT1002_00649 at 705.623 kb on - strand, within MIT1002_00649 at 705.623 kb on - strand, within MIT1002_00649 at 705.638 kb on - strand, within MIT1002_00649 at 705.656 kb on + strand, within MIT1002_00649 at 705.754 kb on + strand, within MIT1002_00649 at 705.787 kb on + strand, within MIT1002_00649 at 705.799 kb on + strand, within MIT1002_00649 at 705.837 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.863 kb on + strand, within MIT1002_00649 at 705.868 kb on + strand, within MIT1002_00649 at 705.868 kb on + strand, within MIT1002_00649
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 701,885 - MIT1002_00646 0.70 -0.4 701,887 + MIT1002_00646 0.70 +0.1 702,169 + -1.5 702,181 - -2.4 702,236 - -0.5 702,287 - MIT1002_00647 0.16 -3.1 702,305 - MIT1002_00647 0.19 +1.5 702,421 + MIT1002_00647 0.41 -1.0 702,629 + MIT1002_00647 0.79 -2.9 702,632 - MIT1002_00647 0.79 -0.9 702,677 + MIT1002_00647 0.88 -1.3 702,677 + MIT1002_00647 0.88 +1.5 702,677 + MIT1002_00647 0.88 -1.5 702,682 + MIT1002_00647 0.89 +1.5 702,685 - MIT1002_00647 0.89 -2.4 702,690 - -2.1 702,690 - -4.3 702,690 - -1.5 702,768 + +0.5 702,776 - -2.3 702,776 - +0.1 702,783 + +1.6 702,786 - -4.6 702,791 - -0.9 702,862 + -0.1 702,930 - +0.2 702,932 + -2.9 702,932 + -2.1 702,932 + -1.0 702,932 + -0.1 702,940 - -2.1 702,940 - -4.3 702,982 + -1.4 702,982 + -0.0 702,996 + -1.1 703,038 + -0.4 703,075 + MIT1002_00648 0.10 -1.2 703,184 + MIT1002_00648 0.15 -1.6 703,300 + MIT1002_00648 0.20 -2.0 703,341 - MIT1002_00648 0.22 -0.7 703,373 + MIT1002_00648 0.23 +0.3 703,384 - MIT1002_00648 0.23 -2.8 703,427 + MIT1002_00648 0.25 -2.4 703,441 - MIT1002_00648 0.26 -0.1 703,443 + MIT1002_00648 0.26 -0.9 703,443 - MIT1002_00648 0.26 -2.0 703,540 - MIT1002_00648 0.30 -0.7 703,555 - MIT1002_00648 0.31 +0.1 703,627 - MIT1002_00648 0.34 -2.8 703,741 - MIT1002_00648 0.39 -1.1 703,759 - MIT1002_00648 0.40 -0.5 703,933 - MIT1002_00648 0.47 -2.7 703,979 + MIT1002_00648 0.49 -1.0 703,979 + MIT1002_00648 0.49 -2.7 703,986 + MIT1002_00648 0.49 -2.6 703,987 - MIT1002_00648 0.49 -0.1 704,012 - MIT1002_00648 0.51 +1.5 704,051 + MIT1002_00648 0.52 -0.2 704,080 + MIT1002_00648 0.53 -1.0 704,180 - MIT1002_00648 0.58 -4.4 704,271 + MIT1002_00648 0.62 -1.1 704,272 + MIT1002_00648 0.62 +0.9 704,272 + MIT1002_00648 0.62 -2.3 704,279 - MIT1002_00648 0.62 -0.5 704,280 - MIT1002_00648 0.62 +0.6 704,280 - MIT1002_00648 0.62 -1.1 704,287 - MIT1002_00648 0.62 -0.6 704,419 + MIT1002_00648 0.68 -2.8 704,424 + MIT1002_00648 0.68 -5.2 704,479 + MIT1002_00648 0.71 -5.6 704,485 + MIT1002_00648 0.71 -0.4 704,493 - MIT1002_00648 0.71 -1.9 704,516 + MIT1002_00648 0.72 -1.9 704,539 + MIT1002_00648 0.73 -1.4 704,544 + MIT1002_00648 0.73 -4.0 704,547 - MIT1002_00648 0.74 -2.0 704,547 - MIT1002_00648 0.74 -0.1 704,552 - MIT1002_00648 0.74 +0.3 704,603 - MIT1002_00648 0.76 -1.4 704,665 - MIT1002_00648 0.79 -2.2 704,676 - MIT1002_00648 0.79 -0.2 704,806 - MIT1002_00648 0.85 -1.9 704,834 - MIT1002_00648 0.86 +0.6 704,964 + -2.2 704,997 - -2.3 704,997 - -1.2 705,040 + -1.8 705,043 - -2.4 705,046 + -1.8 705,070 + -0.5 705,084 + -2.2 705,122 - +1.5 705,122 - +0.3 705,183 + +0.1 705,183 - -0.1 705,191 - -1.1 705,288 + MIT1002_00649 0.16 -0.2 705,305 - MIT1002_00649 0.18 -0.2 705,403 - MIT1002_00649 0.30 +1.5 705,419 + MIT1002_00649 0.32 -1.2 705,419 + MIT1002_00649 0.32 -0.5 705,427 - MIT1002_00649 0.33 +1.5 705,427 - MIT1002_00649 0.33 -1.7 705,429 + MIT1002_00649 0.33 -0.2 705,429 + MIT1002_00649 0.33 -0.2 705,437 - MIT1002_00649 0.34 +0.8 705,437 - MIT1002_00649 0.34 +1.9 705,437 - MIT1002_00649 0.34 -0.8 705,437 - MIT1002_00649 0.34 +0.6 705,437 - MIT1002_00649 0.34 -1.1 705,494 + MIT1002_00649 0.41 +1.9 705,494 + MIT1002_00649 0.41 -0.1 705,502 - MIT1002_00649 0.42 -0.2 705,623 - MIT1002_00649 0.57 -1.5 705,623 - MIT1002_00649 0.57 +0.5 705,638 - MIT1002_00649 0.59 +0.1 705,656 + MIT1002_00649 0.61 +0.6 705,754 + MIT1002_00649 0.73 -0.8 705,787 + MIT1002_00649 0.77 -0.3 705,799 + MIT1002_00649 0.79 -0.6 705,837 + MIT1002_00649 0.84 -0.8 705,844 + MIT1002_00649 0.85 -0.5 705,844 + MIT1002_00649 0.85 +2.2 705,844 + MIT1002_00649 0.85 -1.1 705,844 + MIT1002_00649 0.85 -0.2 705,863 + MIT1002_00649 0.87 +0.1 705,868 + MIT1002_00649 0.87 -0.2 705,868 + MIT1002_00649 0.87 -1.4
Or see this region's nucleotide sequence