Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00645 and MIT1002_00646 are separated by 31 nucleotides MIT1002_00646 and MIT1002_00647 are separated by 113 nucleotides MIT1002_00647 and MIT1002_00648 are separated by 96 nucleotides
MIT1002_00645: MIT1002_00645 - hypothetical protein, at 700,299 to 701,378
_00645
MIT1002_00646: MIT1002_00646 - Methyl-directed mismatch repair protein, at 701,410 to 702,087
_00646
MIT1002_00647: MIT1002_00647 - RNA pyrophosphohydrolase, at 702,201 to 702,743
_00647
MIT1002_00648: MIT1002_00648 - Phosphoenolpyruvate-protein phosphotransferase, at 702,840 to 705,158
_00648
Position (kb) 702
703 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 701.260 kb on + strand, within MIT1002_00645 at 701.260 kb on + strand, within MIT1002_00645 at 701.260 kb on + strand, within MIT1002_00645 at 701.260 kb on + strand, within MIT1002_00645 at 701.354 kb on + strand at 701.392 kb on - strand at 701.397 kb on - strand at 701.487 kb on - strand, within MIT1002_00646 at 701.515 kb on + strand, within MIT1002_00646 at 701.515 kb on + strand, within MIT1002_00646 at 701.566 kb on - strand, within MIT1002_00646 at 701.590 kb on - strand, within MIT1002_00646 at 701.597 kb on + strand, within MIT1002_00646 at 701.621 kb on + strand, within MIT1002_00646 at 701.678 kb on + strand, within MIT1002_00646 at 701.697 kb on - strand, within MIT1002_00646 at 701.703 kb on + strand, within MIT1002_00646 at 701.716 kb on + strand, within MIT1002_00646 at 701.885 kb on - strand, within MIT1002_00646 at 701.887 kb on + strand, within MIT1002_00646 at 702.169 kb on + strand at 702.181 kb on - strand at 702.236 kb on - strand at 702.287 kb on - strand, within MIT1002_00647 at 702.305 kb on - strand, within MIT1002_00647 at 702.421 kb on + strand, within MIT1002_00647 at 702.629 kb on + strand, within MIT1002_00647 at 702.632 kb on - strand, within MIT1002_00647 at 702.677 kb on + strand, within MIT1002_00647 at 702.677 kb on + strand, within MIT1002_00647 at 702.677 kb on + strand, within MIT1002_00647 at 702.682 kb on + strand, within MIT1002_00647 at 702.685 kb on - strand, within MIT1002_00647 at 702.690 kb on - strand at 702.690 kb on - strand at 702.690 kb on - strand at 702.768 kb on + strand at 702.776 kb on - strand at 702.776 kb on - strand at 702.783 kb on + strand at 702.786 kb on - strand at 702.791 kb on - strand at 702.862 kb on + strand at 702.930 kb on - strand at 702.932 kb on + strand at 702.932 kb on + strand at 702.932 kb on + strand at 702.932 kb on + strand at 702.940 kb on - strand at 702.940 kb on - strand at 702.982 kb on + strand at 702.982 kb on + strand at 702.996 kb on + strand at 703.038 kb on + strand at 703.075 kb on + strand, within MIT1002_00648 at 703.184 kb on + strand, within MIT1002_00648 at 703.300 kb on + strand, within MIT1002_00648 at 703.341 kb on - strand, within MIT1002_00648 at 703.373 kb on + strand, within MIT1002_00648 at 703.384 kb on - strand, within MIT1002_00648 at 703.427 kb on + strand, within MIT1002_00648 at 703.441 kb on - strand, within MIT1002_00648 at 703.443 kb on + strand, within MIT1002_00648 at 703.443 kb on - strand, within MIT1002_00648 at 703.540 kb on - strand, within MIT1002_00648 at 703.555 kb on - strand, within MIT1002_00648 at 703.627 kb on - strand, within MIT1002_00648 at 703.741 kb on - strand, within MIT1002_00648
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 701,260 + MIT1002_00645 0.89 +0.7 701,260 + MIT1002_00645 0.89 +0.4 701,260 + MIT1002_00645 0.89 -0.3 701,260 + MIT1002_00645 0.89 -0.5 701,354 + -1.2 701,392 - -1.6 701,397 - -0.5 701,487 - MIT1002_00646 0.11 +1.7 701,515 + MIT1002_00646 0.15 -1.2 701,515 + MIT1002_00646 0.15 +1.5 701,566 - MIT1002_00646 0.23 -2.3 701,590 - MIT1002_00646 0.27 +1.1 701,597 + MIT1002_00646 0.28 -1.6 701,621 + MIT1002_00646 0.31 +1.2 701,678 + MIT1002_00646 0.40 -0.2 701,697 - MIT1002_00646 0.42 +2.1 701,703 + MIT1002_00646 0.43 +1.6 701,716 + MIT1002_00646 0.45 +4.9 701,885 - MIT1002_00646 0.70 -0.4 701,887 + MIT1002_00646 0.70 +0.1 702,169 + -1.5 702,181 - -2.4 702,236 - -0.5 702,287 - MIT1002_00647 0.16 -3.1 702,305 - MIT1002_00647 0.19 +1.5 702,421 + MIT1002_00647 0.41 -1.0 702,629 + MIT1002_00647 0.79 -2.9 702,632 - MIT1002_00647 0.79 -0.9 702,677 + MIT1002_00647 0.88 -1.3 702,677 + MIT1002_00647 0.88 +1.5 702,677 + MIT1002_00647 0.88 -1.5 702,682 + MIT1002_00647 0.89 +1.5 702,685 - MIT1002_00647 0.89 -2.4 702,690 - -2.1 702,690 - -4.3 702,690 - -1.5 702,768 + +0.5 702,776 - -2.3 702,776 - +0.1 702,783 + +1.6 702,786 - -4.6 702,791 - -0.9 702,862 + -0.1 702,930 - +0.2 702,932 + -2.9 702,932 + -2.1 702,932 + -1.0 702,932 + -0.1 702,940 - -2.1 702,940 - -4.3 702,982 + -1.4 702,982 + -0.0 702,996 + -1.1 703,038 + -0.4 703,075 + MIT1002_00648 0.10 -1.2 703,184 + MIT1002_00648 0.15 -1.6 703,300 + MIT1002_00648 0.20 -2.0 703,341 - MIT1002_00648 0.22 -0.7 703,373 + MIT1002_00648 0.23 +0.3 703,384 - MIT1002_00648 0.23 -2.8 703,427 + MIT1002_00648 0.25 -2.4 703,441 - MIT1002_00648 0.26 -0.1 703,443 + MIT1002_00648 0.26 -0.9 703,443 - MIT1002_00648 0.26 -2.0 703,540 - MIT1002_00648 0.30 -0.7 703,555 - MIT1002_00648 0.31 +0.1 703,627 - MIT1002_00648 0.34 -2.8 703,741 - MIT1002_00648 0.39 -1.1
Or see this region's nucleotide sequence