Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00628

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00626 and MIT1002_00627 are separated by 1 nucleotidesMIT1002_00627 and MIT1002_00628 overlap by 4 nucleotidesMIT1002_00628 and MIT1002_00629 are separated by 80 nucleotides MIT1002_00626: MIT1002_00626 - Murein hydrolase activator NlpD precursor, at 674,895 to 675,764 _00626 MIT1002_00627: MIT1002_00627 - Inner membrane protein YqaA, at 675,766 to 676,344 _00627 MIT1002_00628: MIT1002_00628 - Protein-L-isoaspartate O-methyltransferase, at 676,341 to 676,976 _00628 MIT1002_00629: MIT1002_00629 - tRNA pseudouridine synthase D, at 677,057 to 678,142 _00629 Position (kb) 676 677Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 675.450 kb on - strand, within MIT1002_00626at 675.450 kb on - strand, within MIT1002_00626at 675.584 kb on - strand, within MIT1002_00626at 675.586 kb on + strand, within MIT1002_00626at 675.600 kb on + strand, within MIT1002_00626at 675.754 kb on + strandat 675.830 kb on - strand, within MIT1002_00627at 675.832 kb on - strand, within MIT1002_00627at 676.029 kb on + strand, within MIT1002_00627at 676.029 kb on + strand, within MIT1002_00627at 676.314 kb on - strandat 676.314 kb on - strandat 676.352 kb on - strandat 676.502 kb on + strand, within MIT1002_00628at 676.655 kb on + strand, within MIT1002_00628at 676.655 kb on + strand, within MIT1002_00628at 676.663 kb on - strand, within MIT1002_00628at 676.701 kb on + strand, within MIT1002_00628at 676.715 kb on - strand, within MIT1002_00628at 676.794 kb on - strand, within MIT1002_00628at 676.809 kb on + strand, within MIT1002_00628at 676.809 kb on + strand, within MIT1002_00628at 676.817 kb on - strand, within MIT1002_00628at 676.817 kb on - strand, within MIT1002_00628at 676.817 kb on - strand, within MIT1002_00628at 676.817 kb on - strand, within MIT1002_00628at 676.843 kb on + strand, within MIT1002_00628at 676.899 kb on + strand, within MIT1002_00628at 677.019 kb on + strandat 677.055 kb on + strandat 677.062 kb on - strandat 677.095 kb on + strandat 677.157 kb on + strandat 677.204 kb on + strand, within MIT1002_00629at 677.204 kb on + strand, within MIT1002_00629at 677.220 kb on - strand, within MIT1002_00629at 677.267 kb on + strand, within MIT1002_00629at 677.280 kb on + strand, within MIT1002_00629at 677.286 kb on + strand, within MIT1002_00629at 677.318 kb on - strand, within MIT1002_00629at 677.334 kb on + strand, within MIT1002_00629at 677.334 kb on - strand, within MIT1002_00629at 677.336 kb on - strand, within MIT1002_00629at 677.344 kb on - strand, within MIT1002_00629at 677.380 kb on + strand, within MIT1002_00629at 677.380 kb on + strand, within MIT1002_00629at 677.380 kb on + strand, within MIT1002_00629at 677.388 kb on - strand, within MIT1002_00629at 677.388 kb on - strand, within MIT1002_00629at 677.388 kb on - strand, within MIT1002_00629at 677.388 kb on - strand, within MIT1002_00629at 677.551 kb on + strand, within MIT1002_00629at 677.551 kb on + strand, within MIT1002_00629at 677.559 kb on - strand, within MIT1002_00629at 677.559 kb on - strand, within MIT1002_00629at 677.559 kb on - strand, within MIT1002_00629at 677.559 kb on - strand, within MIT1002_00629at 677.583 kb on + strand, within MIT1002_00629at 677.603 kb on + strand, within MIT1002_00629at 677.608 kb on + strand, within MIT1002_00629at 677.611 kb on - strand, within MIT1002_00629at 677.616 kb on - strand, within MIT1002_00629at 677.709 kb on - strand, within MIT1002_00629at 677.754 kb on + strand, within MIT1002_00629at 677.754 kb on + strand, within MIT1002_00629at 677.754 kb on + strand, within MIT1002_00629at 677.754 kb on + strand, within MIT1002_00629at 677.762 kb on - strand, within MIT1002_00629at 677.762 kb on - strand, within MIT1002_00629at 677.806 kb on + strand, within MIT1002_00629at 677.806 kb on + strand, within MIT1002_00629at 677.814 kb on - strand, within MIT1002_00629at 677.821 kb on + strand, within MIT1002_00629at 677.849 kb on - strand, within MIT1002_00629at 677.855 kb on - strand, within MIT1002_00629at 677.855 kb on - strand, within MIT1002_00629at 677.881 kb on - strand, within MIT1002_00629at 677.973 kb on + strand, within MIT1002_00629

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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675,450 - MIT1002_00626 0.64 +1.5
675,450 - MIT1002_00626 0.64 -0.4
675,584 - MIT1002_00626 0.79 +1.4
675,586 + MIT1002_00626 0.79 -2.1
675,600 + MIT1002_00626 0.81 -0.7
675,754 + +0.4
675,830 - MIT1002_00627 0.11 -1.6
675,832 - MIT1002_00627 0.11 +1.1
676,029 + MIT1002_00627 0.45 -0.3
676,029 + MIT1002_00627 0.45 -1.2
676,314 - +3.2
676,314 - -0.4
676,352 - -0.5
676,502 + MIT1002_00628 0.25 +0.9
676,655 + MIT1002_00628 0.49 -1.1
676,655 + MIT1002_00628 0.49 +0.7
676,663 - MIT1002_00628 0.51 +0.9
676,701 + MIT1002_00628 0.57 -1.3
676,715 - MIT1002_00628 0.59 -1.1
676,794 - MIT1002_00628 0.71 -0.1
676,809 + MIT1002_00628 0.74 -0.3
676,809 + MIT1002_00628 0.74 -1.0
676,817 - MIT1002_00628 0.75 +0.5
676,817 - MIT1002_00628 0.75 +0.4
676,817 - MIT1002_00628 0.75 -0.5
676,817 - MIT1002_00628 0.75 -0.4
676,843 + MIT1002_00628 0.79 -1.0
676,899 + MIT1002_00628 0.88 -1.3
677,019 + +0.0
677,055 + +0.5
677,062 - +1.7
677,095 + +0.6
677,157 + -1.2
677,204 + MIT1002_00629 0.14 +1.0
677,204 + MIT1002_00629 0.14 +4.2
677,220 - MIT1002_00629 0.15 +0.3
677,267 + MIT1002_00629 0.19 -1.7
677,280 + MIT1002_00629 0.21 -0.2
677,286 + MIT1002_00629 0.21 +1.7
677,318 - MIT1002_00629 0.24 +0.7
677,334 + MIT1002_00629 0.26 -0.2
677,334 - MIT1002_00629 0.26 +0.9
677,336 - MIT1002_00629 0.26 +0.2
677,344 - MIT1002_00629 0.26 +1.9
677,380 + MIT1002_00629 0.30 -0.9
677,380 + MIT1002_00629 0.30 -0.4
677,380 + MIT1002_00629 0.30 +0.7
677,388 - MIT1002_00629 0.30 +0.5
677,388 - MIT1002_00629 0.30 -0.3
677,388 - MIT1002_00629 0.30 +0.8
677,388 - MIT1002_00629 0.30 -1.3
677,551 + MIT1002_00629 0.45 +1.0
677,551 + MIT1002_00629 0.45 +0.7
677,559 - MIT1002_00629 0.46 +0.9
677,559 - MIT1002_00629 0.46 +2.1
677,559 - MIT1002_00629 0.46 +0.4
677,559 - MIT1002_00629 0.46 +0.3
677,583 + MIT1002_00629 0.48 -0.9
677,603 + MIT1002_00629 0.50 -0.0
677,608 + MIT1002_00629 0.51 +2.0
677,611 - MIT1002_00629 0.51 +1.0
677,616 - MIT1002_00629 0.51 +0.7
677,709 - MIT1002_00629 0.60 +0.7
677,754 + MIT1002_00629 0.64 +1.4
677,754 + MIT1002_00629 0.64 -1.1
677,754 + MIT1002_00629 0.64 +0.8
677,754 + MIT1002_00629 0.64 -0.1
677,762 - MIT1002_00629 0.65 +0.0
677,762 - MIT1002_00629 0.65 +2.3
677,806 + MIT1002_00629 0.69 +2.1
677,806 + MIT1002_00629 0.69 +1.0
677,814 - MIT1002_00629 0.70 +0.4
677,821 + MIT1002_00629 0.70 +0.3
677,849 - MIT1002_00629 0.73 +2.0
677,855 - MIT1002_00629 0.73 -1.6
677,855 - MIT1002_00629 0.73 -0.8
677,881 - MIT1002_00629 0.76 +0.8
677,973 + MIT1002_00629 0.84 -1.0

Or see this region's nucleotide sequence