Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00626

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00625 and MIT1002_00626 are separated by 72 nucleotidesMIT1002_00626 and MIT1002_00627 are separated by 1 nucleotidesMIT1002_00627 and MIT1002_00628 overlap by 4 nucleotides MIT1002_00625: MIT1002_00625 - RNA polymerase sigma factor RpoS, at 673,830 to 674,822 _00625 MIT1002_00626: MIT1002_00626 - Murein hydrolase activator NlpD precursor, at 674,895 to 675,764 _00626 MIT1002_00627: MIT1002_00627 - Inner membrane protein YqaA, at 675,766 to 676,344 _00627 MIT1002_00628: MIT1002_00628 - Protein-L-isoaspartate O-methyltransferase, at 676,341 to 676,976 _00628 Position (kb) 674 675 676Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 673.976 kb on + strand, within MIT1002_00625at 673.977 kb on - strand, within MIT1002_00625at 673.985 kb on + strand, within MIT1002_00625at 673.999 kb on - strand, within MIT1002_00625at 674.021 kb on + strand, within MIT1002_00625at 674.034 kb on - strand, within MIT1002_00625at 674.054 kb on - strand, within MIT1002_00625at 674.083 kb on - strand, within MIT1002_00625at 674.085 kb on - strand, within MIT1002_00625at 674.087 kb on + strand, within MIT1002_00625at 674.087 kb on + strand, within MIT1002_00625at 674.090 kb on - strand, within MIT1002_00625at 674.094 kb on + strand, within MIT1002_00625at 674.114 kb on + strand, within MIT1002_00625at 674.121 kb on + strand, within MIT1002_00625at 674.309 kb on - strand, within MIT1002_00625at 674.340 kb on - strand, within MIT1002_00625at 674.349 kb on + strand, within MIT1002_00625at 674.357 kb on - strand, within MIT1002_00625at 674.438 kb on - strand, within MIT1002_00625at 674.522 kb on + strand, within MIT1002_00625at 674.523 kb on - strand, within MIT1002_00625at 674.552 kb on + strand, within MIT1002_00625at 674.644 kb on + strand, within MIT1002_00625at 674.652 kb on - strand, within MIT1002_00625at 674.652 kb on - strand, within MIT1002_00625at 674.659 kb on + strand, within MIT1002_00625at 674.667 kb on + strand, within MIT1002_00625at 674.719 kb on + strand, within MIT1002_00625at 674.789 kb on - strandat 674.789 kb on - strandat 674.803 kb on + strandat 674.946 kb on - strandat 674.993 kb on - strand, within MIT1002_00626at 675.013 kb on + strand, within MIT1002_00626at 675.021 kb on - strand, within MIT1002_00626at 675.025 kb on - strand, within MIT1002_00626at 675.032 kb on - strand, within MIT1002_00626at 675.173 kb on + strand, within MIT1002_00626at 675.235 kb on + strand, within MIT1002_00626at 675.258 kb on - strand, within MIT1002_00626at 675.258 kb on - strand, within MIT1002_00626at 675.258 kb on - strand, within MIT1002_00626at 675.261 kb on + strand, within MIT1002_00626at 675.261 kb on + strand, within MIT1002_00626at 675.269 kb on - strand, within MIT1002_00626at 675.450 kb on - strand, within MIT1002_00626at 675.450 kb on - strand, within MIT1002_00626at 675.584 kb on - strand, within MIT1002_00626at 675.586 kb on + strand, within MIT1002_00626at 675.600 kb on + strand, within MIT1002_00626at 675.754 kb on + strandat 675.830 kb on - strand, within MIT1002_00627at 675.832 kb on - strand, within MIT1002_00627at 676.029 kb on + strand, within MIT1002_00627at 676.029 kb on + strand, within MIT1002_00627at 676.314 kb on - strandat 676.314 kb on - strandat 676.352 kb on - strandat 676.502 kb on + strand, within MIT1002_00628at 676.655 kb on + strand, within MIT1002_00628at 676.655 kb on + strand, within MIT1002_00628at 676.663 kb on - strand, within MIT1002_00628at 676.701 kb on + strand, within MIT1002_00628at 676.715 kb on - strand, within MIT1002_00628

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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673,976 + MIT1002_00625 0.15 +2.4
673,977 - MIT1002_00625 0.15 +1.7
673,985 + MIT1002_00625 0.16 +3.4
673,999 - MIT1002_00625 0.17 +2.7
674,021 + MIT1002_00625 0.19 +2.1
674,034 - MIT1002_00625 0.21 +2.3
674,054 - MIT1002_00625 0.23 +2.7
674,083 - MIT1002_00625 0.25 +2.0
674,085 - MIT1002_00625 0.26 +2.0
674,087 + MIT1002_00625 0.26 +1.9
674,087 + MIT1002_00625 0.26 +1.4
674,090 - MIT1002_00625 0.26 +2.2
674,094 + MIT1002_00625 0.27 +2.9
674,114 + MIT1002_00625 0.29 +0.9
674,121 + MIT1002_00625 0.29 +1.8
674,309 - MIT1002_00625 0.48 +2.5
674,340 - MIT1002_00625 0.51 +2.8
674,349 + MIT1002_00625 0.52 +3.3
674,357 - MIT1002_00625 0.53 +3.4
674,438 - MIT1002_00625 0.61 +3.2
674,522 + MIT1002_00625 0.70 +2.5
674,523 - MIT1002_00625 0.70 +1.5
674,552 + MIT1002_00625 0.73 +2.9
674,644 + MIT1002_00625 0.82 +1.1
674,652 - MIT1002_00625 0.83 +1.3
674,652 - MIT1002_00625 0.83 +2.5
674,659 + MIT1002_00625 0.83 +2.0
674,667 + MIT1002_00625 0.84 +2.3
674,719 + MIT1002_00625 0.90 +1.0
674,789 - +4.3
674,789 - +4.0
674,803 + +0.9
674,946 - +1.5
674,993 - MIT1002_00626 0.11 +1.5
675,013 + MIT1002_00626 0.14 +1.8
675,021 - MIT1002_00626 0.14 +0.4
675,025 - MIT1002_00626 0.15 +1.4
675,032 - MIT1002_00626 0.16 +1.8
675,173 + MIT1002_00626 0.32 +1.1
675,235 + MIT1002_00626 0.39 +1.7
675,258 - MIT1002_00626 0.42 -0.1
675,258 - MIT1002_00626 0.42 -0.2
675,258 - MIT1002_00626 0.42 -0.1
675,261 + MIT1002_00626 0.42 +1.8
675,261 + MIT1002_00626 0.42 +1.0
675,269 - MIT1002_00626 0.43 +0.6
675,450 - MIT1002_00626 0.64 +1.5
675,450 - MIT1002_00626 0.64 -0.4
675,584 - MIT1002_00626 0.79 +1.4
675,586 + MIT1002_00626 0.79 -2.1
675,600 + MIT1002_00626 0.81 -0.7
675,754 + +0.4
675,830 - MIT1002_00627 0.11 -1.6
675,832 - MIT1002_00627 0.11 +1.1
676,029 + MIT1002_00627 0.45 -0.3
676,029 + MIT1002_00627 0.45 -1.2
676,314 - +3.2
676,314 - -0.4
676,352 - -0.5
676,502 + MIT1002_00628 0.25 +0.9
676,655 + MIT1002_00628 0.49 -1.1
676,655 + MIT1002_00628 0.49 +0.7
676,663 - MIT1002_00628 0.51 +0.9
676,701 + MIT1002_00628 0.57 -1.3
676,715 - MIT1002_00628 0.59 -1.1

Or see this region's nucleotide sequence