Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00569 and MIT1002_00571 are separated by 653 nucleotides MIT1002_00571 and MIT1002_00572 are separated by 157 nucleotides MIT1002_00572 and MIT1002_00573 are separated by 271 nucleotides
MIT1002_00569: MIT1002_00569 - hypothetical protein, at 613,187 to 613,795
_00569
MIT1002_00571: MIT1002_00571 - Group II intron-encoded protein LtrA, at 614,449 to 615,798
_00571
MIT1002_00572: MIT1002_00572 - hypothetical protein, at 615,956 to 616,144
_00572
MIT1002_00573: MIT1002_00573 - Tyrosine recombinase XerD, at 616,416 to 617,369
_00573
Position (kb) 614
615
616 Strain fitness (log2 ratio) -2
-1
0
1
2 at 613.497 kb on + strand, within MIT1002_00569 at 613.499 kb on + strand, within MIT1002_00569 at 613.507 kb on - strand, within MIT1002_00569 at 613.517 kb on + strand, within MIT1002_00569 at 613.601 kb on - strand, within MIT1002_00569 at 613.687 kb on - strand, within MIT1002_00569 at 613.802 kb on - strand at 613.943 kb on - strand at 615.874 kb on - strand at 615.924 kb on + strand at 615.978 kb on + strand, within MIT1002_00572 at 615.978 kb on + strand, within MIT1002_00572 at 615.986 kb on - strand, within MIT1002_00572 at 615.986 kb on - strand, within MIT1002_00572 at 615.986 kb on - strand, within MIT1002_00572 at 615.986 kb on - strand, within MIT1002_00572 at 616.022 kb on + strand, within MIT1002_00572 at 616.103 kb on + strand, within MIT1002_00572 at 616.103 kb on + strand, within MIT1002_00572 at 616.111 kb on - strand, within MIT1002_00572 at 616.219 kb on + strand at 616.238 kb on + strand at 616.271 kb on - strand at 616.432 kb on + strand at 616.437 kb on + strand at 616.445 kb on - strand at 616.445 kb on - strand at 616.445 kb on - strand at 616.461 kb on - strand at 616.564 kb on - strand, within MIT1002_00573 at 616.566 kb on + strand, within MIT1002_00573 at 616.574 kb on - strand, within MIT1002_00573 at 616.599 kb on + strand, within MIT1002_00573 at 616.607 kb on - strand, within MIT1002_00573 at 616.662 kb on - strand, within MIT1002_00573 at 616.703 kb on + strand, within MIT1002_00573 at 616.752 kb on + strand, within MIT1002_00573 at 616.792 kb on + strand, within MIT1002_00573
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 613,497 + MIT1002_00569 0.51 -1.8 613,499 + MIT1002_00569 0.51 -0.5 613,507 - MIT1002_00569 0.53 -2.3 613,517 + MIT1002_00569 0.54 -0.1 613,601 - MIT1002_00569 0.68 -0.2 613,687 - MIT1002_00569 0.82 -0.7 613,802 - +0.3 613,943 - +0.5 615,874 - -0.9 615,924 + +0.0 615,978 + MIT1002_00572 0.12 +0.8 615,978 + MIT1002_00572 0.12 -0.7 615,986 - MIT1002_00572 0.16 +0.5 615,986 - MIT1002_00572 0.16 -0.2 615,986 - MIT1002_00572 0.16 -0.0 615,986 - MIT1002_00572 0.16 +2.5 616,022 + MIT1002_00572 0.35 -1.4 616,103 + MIT1002_00572 0.78 -1.6 616,103 + MIT1002_00572 0.78 +0.1 616,111 - MIT1002_00572 0.82 -0.6 616,219 + +0.3 616,238 + -0.9 616,271 - -0.1 616,432 + +0.3 616,437 + +0.1 616,445 - +0.4 616,445 - -0.9 616,445 - +0.6 616,461 - -0.6 616,564 - MIT1002_00573 0.16 -0.7 616,566 + MIT1002_00573 0.16 +0.8 616,574 - MIT1002_00573 0.17 -0.3 616,599 + MIT1002_00573 0.19 +0.0 616,607 - MIT1002_00573 0.20 +0.2 616,662 - MIT1002_00573 0.26 -0.6 616,703 + MIT1002_00573 0.30 -0.7 616,752 + MIT1002_00573 0.35 +0.8 616,792 + MIT1002_00573 0.39 +0.2
Or see this region's nucleotide sequence