Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00534 and MIT1002_00535 are separated by 11 nucleotides MIT1002_00535 and MIT1002_00536 are separated by 52 nucleotides MIT1002_00536 and MIT1002_00537 are separated by 77 nucleotides
MIT1002_00534: MIT1002_00534 - Aldehyde dehydrogenase, at 581,155 to 582,561
_00534
MIT1002_00535: MIT1002_00535 - putative dioxygenase of extradiol dioxygenase family protein, at 582,573 to 582,989
_00535
MIT1002_00536: MIT1002_00536 - putative iron-regulated membrane protein, at 583,042 to 583,761
_00536
MIT1002_00537: MIT1002_00537 - NYN domain protein, at 583,839 to 584,309
_00537
Position (kb) 582
583 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 581.606 kb on - strand, within MIT1002_00534 at 581.678 kb on - strand, within MIT1002_00534 at 581.680 kb on + strand, within MIT1002_00534 at 581.784 kb on - strand, within MIT1002_00534 at 581.813 kb on + strand, within MIT1002_00534 at 581.813 kb on + strand, within MIT1002_00534 at 581.813 kb on + strand, within MIT1002_00534 at 581.813 kb on + strand, within MIT1002_00534 at 581.813 kb on + strand, within MIT1002_00534 at 581.813 kb on + strand, within MIT1002_00534 at 581.813 kb on + strand, within MIT1002_00534 at 581.813 kb on + strand, within MIT1002_00534 at 581.821 kb on - strand, within MIT1002_00534 at 581.821 kb on - strand, within MIT1002_00534 at 581.821 kb on - strand, within MIT1002_00534 at 581.821 kb on - strand, within MIT1002_00534 at 581.821 kb on - strand, within MIT1002_00534 at 581.861 kb on + strand, within MIT1002_00534 at 581.890 kb on - strand, within MIT1002_00534 at 581.890 kb on - strand, within MIT1002_00534 at 581.936 kb on + strand, within MIT1002_00534 at 582.139 kb on + strand, within MIT1002_00534 at 582.154 kb on - strand, within MIT1002_00534 at 582.154 kb on - strand, within MIT1002_00534 at 582.171 kb on - strand, within MIT1002_00534 at 582.205 kb on + strand, within MIT1002_00534 at 582.205 kb on + strand, within MIT1002_00534 at 582.213 kb on - strand, within MIT1002_00534 at 582.223 kb on + strand, within MIT1002_00534 at 582.258 kb on + strand, within MIT1002_00534 at 582.263 kb on + strand, within MIT1002_00534 at 582.263 kb on + strand, within MIT1002_00534 at 582.263 kb on + strand, within MIT1002_00534 at 582.263 kb on + strand, within MIT1002_00534 at 582.271 kb on - strand, within MIT1002_00534 at 582.271 kb on - strand, within MIT1002_00534 at 582.344 kb on + strand, within MIT1002_00534 at 582.346 kb on + strand, within MIT1002_00534 at 582.359 kb on + strand, within MIT1002_00534 at 582.359 kb on + strand, within MIT1002_00534 at 582.369 kb on + strand, within MIT1002_00534 at 582.369 kb on + strand, within MIT1002_00534 at 582.369 kb on + strand, within MIT1002_00534 at 582.377 kb on - strand, within MIT1002_00534 at 582.377 kb on - strand, within MIT1002_00534 at 582.388 kb on - strand, within MIT1002_00534 at 582.536 kb on - strand at 582.629 kb on + strand, within MIT1002_00535 at 582.637 kb on - strand, within MIT1002_00535 at 582.641 kb on + strand, within MIT1002_00535 at 582.649 kb on - strand, within MIT1002_00535 at 582.660 kb on - strand, within MIT1002_00535 at 582.692 kb on - strand, within MIT1002_00535 at 582.721 kb on + strand, within MIT1002_00535 at 582.729 kb on - strand, within MIT1002_00535 at 582.729 kb on - strand, within MIT1002_00535 at 582.729 kb on - strand, within MIT1002_00535 at 582.736 kb on - strand, within MIT1002_00535 at 582.788 kb on + strand, within MIT1002_00535 at 582.798 kb on + strand, within MIT1002_00535 at 582.798 kb on + strand, within MIT1002_00535 at 582.806 kb on - strand, within MIT1002_00535 at 582.830 kb on - strand, within MIT1002_00535 at 582.975 kb on - strand at 582.999 kb on + strand at 582.999 kb on - strand at 583.027 kb on - strand at 583.029 kb on + strand at 583.037 kb on - strand at 583.040 kb on + strand at 583.091 kb on + strand at 583.100 kb on - strand at 583.142 kb on + strand, within MIT1002_00536 at 583.241 kb on + strand, within MIT1002_00536 at 583.261 kb on - strand, within MIT1002_00536 at 583.320 kb on - strand, within MIT1002_00536 at 583.320 kb on - strand, within MIT1002_00536 at 583.322 kb on + strand, within MIT1002_00536 at 583.383 kb on - strand, within MIT1002_00536 at 583.401 kb on - strand, within MIT1002_00536 at 583.410 kb on + strand, within MIT1002_00536 at 583.502 kb on + strand, within MIT1002_00536 at 583.522 kb on - strand, within MIT1002_00536 at 583.570 kb on - strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.603 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.629 kb on + strand, within MIT1002_00536 at 583.683 kb on - strand, within MIT1002_00536 at 583.693 kb on - strand at 583.693 kb on - strand at 583.701 kb on - strand at 583.716 kb on + strand at 583.724 kb on - strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.856 kb on - strand at 583.885 kb on - strand at 583.885 kb on - strand at 583.896 kb on - strand, within MIT1002_00537 at 583.985 kb on - strand, within MIT1002_00537
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 581,606 - MIT1002_00534 0.32 -0.4 581,678 - MIT1002_00534 0.37 +0.6 581,680 + MIT1002_00534 0.37 -1.0 581,784 - MIT1002_00534 0.45 +2.1 581,813 + MIT1002_00534 0.47 -3.0 581,813 + MIT1002_00534 0.47 -0.2 581,813 + MIT1002_00534 0.47 -2.9 581,813 + MIT1002_00534 0.47 -0.7 581,813 + MIT1002_00534 0.47 -0.4 581,813 + MIT1002_00534 0.47 +0.1 581,813 + MIT1002_00534 0.47 -0.9 581,813 + MIT1002_00534 0.47 +0.8 581,821 - MIT1002_00534 0.47 +0.1 581,821 - MIT1002_00534 0.47 -1.7 581,821 - MIT1002_00534 0.47 -0.1 581,821 - MIT1002_00534 0.47 +1.2 581,821 - MIT1002_00534 0.47 -0.4 581,861 + MIT1002_00534 0.50 -0.0 581,890 - MIT1002_00534 0.52 +0.7 581,890 - MIT1002_00534 0.52 -0.1 581,936 + MIT1002_00534 0.56 -0.9 582,139 + MIT1002_00534 0.70 +0.3 582,154 - MIT1002_00534 0.71 -0.6 582,154 - MIT1002_00534 0.71 -1.5 582,171 - MIT1002_00534 0.72 -0.5 582,205 + MIT1002_00534 0.75 -0.8 582,205 + MIT1002_00534 0.75 +0.9 582,213 - MIT1002_00534 0.75 -2.0 582,223 + MIT1002_00534 0.76 -0.9 582,258 + MIT1002_00534 0.78 +0.5 582,263 + MIT1002_00534 0.79 -1.1 582,263 + MIT1002_00534 0.79 -1.0 582,263 + MIT1002_00534 0.79 -2.6 582,263 + MIT1002_00534 0.79 -0.6 582,271 - MIT1002_00534 0.79 +0.1 582,271 - MIT1002_00534 0.79 -2.9 582,344 + MIT1002_00534 0.85 -0.7 582,346 + MIT1002_00534 0.85 -1.4 582,359 + MIT1002_00534 0.86 -0.1 582,359 + MIT1002_00534 0.86 +0.7 582,369 + MIT1002_00534 0.86 -0.4 582,369 + MIT1002_00534 0.86 -1.4 582,369 + MIT1002_00534 0.86 -1.2 582,377 - MIT1002_00534 0.87 -0.6 582,377 - MIT1002_00534 0.87 -0.9 582,388 - MIT1002_00534 0.88 -0.3 582,536 - -0.9 582,629 + MIT1002_00535 0.13 +0.5 582,637 - MIT1002_00535 0.15 -0.8 582,641 + MIT1002_00535 0.16 -0.6 582,649 - MIT1002_00535 0.18 -0.7 582,660 - MIT1002_00535 0.21 +0.8 582,692 - MIT1002_00535 0.29 +0.7 582,721 + MIT1002_00535 0.35 -1.0 582,729 - MIT1002_00535 0.37 +2.8 582,729 - MIT1002_00535 0.37 +0.8 582,729 - MIT1002_00535 0.37 -0.1 582,736 - MIT1002_00535 0.39 -1.3 582,788 + MIT1002_00535 0.52 -0.2 582,798 + MIT1002_00535 0.54 +0.7 582,798 + MIT1002_00535 0.54 -0.9 582,806 - MIT1002_00535 0.56 +1.4 582,830 - MIT1002_00535 0.62 +0.5 582,975 - +0.2 582,999 + -0.1 582,999 - -0.3 583,027 - +0.0 583,029 + +0.7 583,037 - -1.8 583,040 + -2.2 583,091 + +1.6 583,100 - +0.1 583,142 + MIT1002_00536 0.14 -0.4 583,241 + MIT1002_00536 0.28 -0.7 583,261 - MIT1002_00536 0.30 -0.9 583,320 - MIT1002_00536 0.39 -0.8 583,320 - MIT1002_00536 0.39 -0.5 583,322 + MIT1002_00536 0.39 -0.1 583,383 - MIT1002_00536 0.47 +1.5 583,401 - MIT1002_00536 0.50 +0.0 583,410 + MIT1002_00536 0.51 +0.8 583,502 + MIT1002_00536 0.64 -1.4 583,522 - MIT1002_00536 0.67 -1.2 583,570 - MIT1002_00536 0.73 -1.1 583,596 + MIT1002_00536 0.77 -1.8 583,596 + MIT1002_00536 0.77 +0.1 583,596 + MIT1002_00536 0.77 +1.3 583,596 + MIT1002_00536 0.77 +0.3 583,596 + MIT1002_00536 0.77 -1.0 583,603 - MIT1002_00536 0.78 -1.5 583,604 - MIT1002_00536 0.78 +0.8 583,604 - MIT1002_00536 0.78 +0.8 583,604 - MIT1002_00536 0.78 -0.0 583,629 + MIT1002_00536 0.82 +0.4 583,683 - MIT1002_00536 0.89 -5.3 583,693 - +0.8 583,693 - +1.1 583,701 - +2.1 583,716 + +0.4 583,724 - +0.7 583,732 + -0.3 583,732 + -2.0 583,732 + +0.7 583,732 + -0.4 583,856 - +0.9 583,885 - +0.9 583,885 - +0.3 583,896 - MIT1002_00537 0.12 -2.8 583,985 - MIT1002_00537 0.31 +0.6
Or see this region's nucleotide sequence