Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00475

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00473 and MIT1002_00474 are separated by 161 nucleotidesMIT1002_00474 and MIT1002_00475 are separated by 5 nucleotidesMIT1002_00475 and MIT1002_00476 are separated by 54 nucleotides MIT1002_00473: MIT1002_00473 - hypothetical protein, at 517,025 to 517,981 _00473 MIT1002_00474: MIT1002_00474 - flagellar basal body L-ring protein, at 518,143 to 518,892 _00474 MIT1002_00475: MIT1002_00475 - hypothetical protein, at 518,898 to 520,151 _00475 MIT1002_00476: MIT1002_00476 - periplasmic repressor CpxP, at 520,206 to 521,087 _00476 Position (kb) 518 519 520 521Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 517.976 kb on + strandat 517.984 kb on - strandat 517.984 kb on - strandat 517.988 kb on + strandat 518.166 kb on - strandat 518.188 kb on - strandat 518.201 kb on + strandat 518.217 kb on - strandat 518.230 kb on + strand, within MIT1002_00474at 518.230 kb on + strand, within MIT1002_00474at 518.249 kb on + strand, within MIT1002_00474at 518.257 kb on - strand, within MIT1002_00474at 518.313 kb on - strand, within MIT1002_00474at 518.323 kb on - strand, within MIT1002_00474at 518.328 kb on + strand, within MIT1002_00474at 518.339 kb on + strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.347 kb on - strand, within MIT1002_00474at 518.370 kb on + strand, within MIT1002_00474at 518.375 kb on + strand, within MIT1002_00474at 518.378 kb on - strand, within MIT1002_00474at 518.378 kb on - strand, within MIT1002_00474at 518.387 kb on + strand, within MIT1002_00474at 518.387 kb on + strand, within MIT1002_00474at 518.387 kb on + strand, within MIT1002_00474at 518.390 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.395 kb on - strand, within MIT1002_00474at 518.525 kb on + strand, within MIT1002_00474at 518.525 kb on + strand, within MIT1002_00474at 518.562 kb on + strand, within MIT1002_00474at 518.598 kb on - strand, within MIT1002_00474at 518.707 kb on + strand, within MIT1002_00474at 518.797 kb on - strand, within MIT1002_00474at 518.817 kb on + strand, within MIT1002_00474at 518.845 kb on + strandat 518.932 kb on + strandat 518.941 kb on - strandat 518.994 kb on + strandat 518.997 kb on - strandat 518.997 kb on - strandat 518.999 kb on + strandat 518.999 kb on + strandat 519.001 kb on - strandat 519.002 kb on - strandat 519.033 kb on - strand, within MIT1002_00475at 519.033 kb on - strand, within MIT1002_00475at 519.038 kb on - strand, within MIT1002_00475at 519.113 kb on + strand, within MIT1002_00475at 519.113 kb on + strand, within MIT1002_00475at 519.121 kb on - strand, within MIT1002_00475at 519.188 kb on + strand, within MIT1002_00475at 519.225 kb on - strand, within MIT1002_00475at 519.227 kb on - strand, within MIT1002_00475at 519.230 kb on + strand, within MIT1002_00475at 519.242 kb on + strand, within MIT1002_00475at 519.242 kb on + strand, within MIT1002_00475at 519.250 kb on - strand, within MIT1002_00475at 519.254 kb on + strand, within MIT1002_00475at 519.326 kb on - strand, within MIT1002_00475at 519.386 kb on + strand, within MIT1002_00475at 519.514 kb on + strand, within MIT1002_00475at 519.514 kb on + strand, within MIT1002_00475at 519.542 kb on - strand, within MIT1002_00475at 519.615 kb on - strand, within MIT1002_00475at 519.700 kb on - strand, within MIT1002_00475at 519.720 kb on - strand, within MIT1002_00475at 519.737 kb on + strand, within MIT1002_00475at 519.762 kb on + strand, within MIT1002_00475at 519.777 kb on + strand, within MIT1002_00475at 519.779 kb on + strand, within MIT1002_00475at 519.785 kb on - strand, within MIT1002_00475at 519.801 kb on - strand, within MIT1002_00475at 519.819 kb on + strand, within MIT1002_00475at 519.819 kb on + strand, within MIT1002_00475at 519.884 kb on - strand, within MIT1002_00475at 519.885 kb on - strand, within MIT1002_00475at 520.053 kb on + strandat 520.053 kb on + strandat 520.061 kb on - strandat 520.089 kb on + strandat 520.114 kb on + strandat 520.185 kb on + strandat 520.187 kb on + strandat 520.195 kb on - strandat 520.204 kb on - strandat 520.229 kb on + strandat 520.271 kb on + strandat 520.271 kb on + strandat 520.271 kb on + strandat 520.278 kb on + strandat 520.279 kb on - strandat 520.279 kb on - strandat 520.297 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.342 kb on + strand, within MIT1002_00476at 520.350 kb on - strand, within MIT1002_00476at 520.350 kb on - strand, within MIT1002_00476at 520.350 kb on - strand, within MIT1002_00476at 520.364 kb on + strand, within MIT1002_00476at 520.401 kb on - strand, within MIT1002_00476at 520.412 kb on + strand, within MIT1002_00476at 520.418 kb on + strand, within MIT1002_00476at 520.425 kb on - strand, within MIT1002_00476at 520.426 kb on - strand, within MIT1002_00476at 520.426 kb on - strand, within MIT1002_00476at 520.426 kb on - strand, within MIT1002_00476at 520.511 kb on + strand, within MIT1002_00476at 520.511 kb on + strand, within MIT1002_00476at 520.511 kb on + strand, within MIT1002_00476at 520.519 kb on - strand, within MIT1002_00476at 520.519 kb on - strand, within MIT1002_00476at 520.519 kb on - strand, within MIT1002_00476at 520.527 kb on - strand, within MIT1002_00476at 520.531 kb on + strand, within MIT1002_00476at 520.560 kb on + strand, within MIT1002_00476at 520.617 kb on - strand, within MIT1002_00476at 520.724 kb on + strand, within MIT1002_00476at 520.732 kb on - strand, within MIT1002_00476at 520.732 kb on - strand, within MIT1002_00476at 520.808 kb on + strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.816 kb on - strand, within MIT1002_00476at 520.918 kb on + strand, within MIT1002_00476at 520.937 kb on + strand, within MIT1002_00476at 520.951 kb on + strand, within MIT1002_00476at 520.952 kb on - strand, within MIT1002_00476at 521.049 kb on - strandat 521.112 kb on + strandat 521.112 kb on + strandat 521.120 kb on - strandat 521.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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517,976 + +0.2
517,984 - +0.4
517,984 - -0.8
517,988 + -1.2
518,166 - +0.7
518,188 - +0.3
518,201 + -2.0
518,217 - +1.3
518,230 + MIT1002_00474 0.12 -0.1
518,230 + MIT1002_00474 0.12 -0.7
518,249 + MIT1002_00474 0.14 -2.0
518,257 - MIT1002_00474 0.15 +3.0
518,313 - MIT1002_00474 0.23 -0.8
518,323 - MIT1002_00474 0.24 -1.1
518,328 + MIT1002_00474 0.25 +1.4
518,339 + MIT1002_00474 0.26 -0.2
518,347 - MIT1002_00474 0.27 +0.0
518,347 - MIT1002_00474 0.27 +2.8
518,347 - MIT1002_00474 0.27 -1.2
518,347 - MIT1002_00474 0.27 -0.6
518,347 - MIT1002_00474 0.27 +0.3
518,370 + MIT1002_00474 0.30 +1.2
518,375 + MIT1002_00474 0.31 -0.7
518,378 - MIT1002_00474 0.31 +0.4
518,378 - MIT1002_00474 0.31 +1.2
518,387 + MIT1002_00474 0.33 -0.5
518,387 + MIT1002_00474 0.33 +0.9
518,387 + MIT1002_00474 0.33 -0.3
518,390 - MIT1002_00474 0.33 +0.5
518,395 - MIT1002_00474 0.34 -1.5
518,395 - MIT1002_00474 0.34 -1.6
518,395 - MIT1002_00474 0.34 +0.9
518,395 - MIT1002_00474 0.34 +0.0
518,525 + MIT1002_00474 0.51 -1.3
518,525 + MIT1002_00474 0.51 +0.3
518,562 + MIT1002_00474 0.56 +0.2
518,598 - MIT1002_00474 0.61 -0.4
518,707 + MIT1002_00474 0.75 +1.9
518,797 - MIT1002_00474 0.87 +1.2
518,817 + MIT1002_00474 0.90 +0.0
518,845 + -1.1
518,932 + +0.6
518,941 - -0.5
518,994 + -0.3
518,997 - -0.2
518,997 - -2.8
518,999 + +0.2
518,999 + +0.2
519,001 - +0.2
519,002 - -0.7
519,033 - MIT1002_00475 0.11 +0.2
519,033 - MIT1002_00475 0.11 +1.5
519,038 - MIT1002_00475 0.11 +0.4
519,113 + MIT1002_00475 0.17 -1.9
519,113 + MIT1002_00475 0.17 -1.5
519,121 - MIT1002_00475 0.18 +1.8
519,188 + MIT1002_00475 0.23 -0.1
519,225 - MIT1002_00475 0.26 +0.9
519,227 - MIT1002_00475 0.26 -1.7
519,230 + MIT1002_00475 0.26 +0.4
519,242 + MIT1002_00475 0.27 -1.6
519,242 + MIT1002_00475 0.27 -1.1
519,250 - MIT1002_00475 0.28 -1.3
519,254 + MIT1002_00475 0.28 +3.2
519,326 - MIT1002_00475 0.34 -0.7
519,386 + MIT1002_00475 0.39 +0.3
519,514 + MIT1002_00475 0.49 -1.8
519,514 + MIT1002_00475 0.49 +0.0
519,542 - MIT1002_00475 0.51 +1.7
519,615 - MIT1002_00475 0.57 +0.2
519,700 - MIT1002_00475 0.64 +2.2
519,720 - MIT1002_00475 0.66 -0.0
519,737 + MIT1002_00475 0.67 -0.9
519,762 + MIT1002_00475 0.69 +0.2
519,777 + MIT1002_00475 0.70 -1.0
519,779 + MIT1002_00475 0.70 -0.3
519,785 - MIT1002_00475 0.71 +0.9
519,801 - MIT1002_00475 0.72 -1.3
519,819 + MIT1002_00475 0.73 +0.1
519,819 + MIT1002_00475 0.73 +0.3
519,884 - MIT1002_00475 0.79 -0.2
519,885 - MIT1002_00475 0.79 -0.3
520,053 + -0.3
520,053 + -2.2
520,061 - +0.3
520,089 + -0.4
520,114 + +0.2
520,185 + -0.5
520,187 + +1.2
520,195 - +2.2
520,204 - -0.6
520,229 + +0.0
520,271 + +0.3
520,271 + +0.0
520,271 + -0.2
520,278 + +4.0
520,279 - -1.1
520,279 - -0.7
520,297 + MIT1002_00476 0.10 -0.5
520,342 + MIT1002_00476 0.15 -0.0
520,342 + MIT1002_00476 0.15 -0.4
520,342 + MIT1002_00476 0.15 -2.2
520,342 + MIT1002_00476 0.15 -0.9
520,350 - MIT1002_00476 0.16 -0.4
520,350 - MIT1002_00476 0.16 +0.3
520,350 - MIT1002_00476 0.16 +0.0
520,364 + MIT1002_00476 0.18 -0.7
520,401 - MIT1002_00476 0.22 +0.3
520,412 + MIT1002_00476 0.23 +2.2
520,418 + MIT1002_00476 0.24 -0.0
520,425 - MIT1002_00476 0.25 +1.0
520,426 - MIT1002_00476 0.25 -0.6
520,426 - MIT1002_00476 0.25 -0.8
520,426 - MIT1002_00476 0.25 -0.2
520,511 + MIT1002_00476 0.35 +0.2
520,511 + MIT1002_00476 0.35 -0.1
520,511 + MIT1002_00476 0.35 +0.9
520,519 - MIT1002_00476 0.35 +1.2
520,519 - MIT1002_00476 0.35 +0.6
520,519 - MIT1002_00476 0.35 +0.7
520,527 - MIT1002_00476 0.36 +0.8
520,531 + MIT1002_00476 0.37 +0.5
520,560 + MIT1002_00476 0.40 -2.4
520,617 - MIT1002_00476 0.47 +1.2
520,724 + MIT1002_00476 0.59 +0.2
520,732 - MIT1002_00476 0.60 -0.1
520,732 - MIT1002_00476 0.60 +0.7
520,808 + MIT1002_00476 0.68 -0.1
520,816 - MIT1002_00476 0.69 +0.5
520,816 - MIT1002_00476 0.69 -0.5
520,816 - MIT1002_00476 0.69 -1.3
520,816 - MIT1002_00476 0.69 +0.1
520,918 + MIT1002_00476 0.81 -1.2
520,937 + MIT1002_00476 0.83 +1.2
520,951 + MIT1002_00476 0.84 -0.7
520,952 - MIT1002_00476 0.85 -0.0
521,049 - +1.2
521,112 + +0.3
521,112 + +0.5
521,120 - -0.6
521,120 - -0.2

Or see this region's nucleotide sequence