Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00437

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00436 and MIT1002_00437 are separated by 20 nucleotidesMIT1002_00437 and MIT1002_00438 are separated by 462 nucleotides MIT1002_00436: MIT1002_00436 - Arginine N-succinyltransferase subunit beta, at 477,217 to 478,254 _00436 MIT1002_00437: MIT1002_00437 - Succinylornithine transaminase/acetylornithine aminotransferase, at 478,275 to 479,483 _00437 MIT1002_00438: MIT1002_00438 - HDOD domain protein, at 479,946 to 481,112 _00438 Position (kb) 478 479 480Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 477.388 kb on + strand, within MIT1002_00436at 477.436 kb on + strand, within MIT1002_00436at 477.444 kb on - strand, within MIT1002_00436at 477.444 kb on - strand, within MIT1002_00436at 477.444 kb on - strand, within MIT1002_00436at 477.446 kb on + strand, within MIT1002_00436at 477.989 kb on - strand, within MIT1002_00436at 478.136 kb on + strand, within MIT1002_00436at 478.324 kb on - strandat 478.343 kb on - strandat 478.409 kb on + strand, within MIT1002_00437at 478.433 kb on - strand, within MIT1002_00437at 478.443 kb on + strand, within MIT1002_00437at 478.470 kb on + strand, within MIT1002_00437at 478.478 kb on - strand, within MIT1002_00437at 478.478 kb on - strand, within MIT1002_00437at 478.490 kb on - strand, within MIT1002_00437at 478.528 kb on + strand, within MIT1002_00437at 478.570 kb on + strand, within MIT1002_00437at 478.570 kb on + strand, within MIT1002_00437at 478.578 kb on - strand, within MIT1002_00437at 478.578 kb on - strand, within MIT1002_00437at 478.626 kb on + strand, within MIT1002_00437at 478.634 kb on - strand, within MIT1002_00437at 478.642 kb on - strand, within MIT1002_00437at 478.656 kb on - strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.666 kb on + strand, within MIT1002_00437at 478.674 kb on - strand, within MIT1002_00437at 478.674 kb on - strand, within MIT1002_00437at 478.674 kb on - strand, within MIT1002_00437at 478.684 kb on - strand, within MIT1002_00437at 478.780 kb on + strand, within MIT1002_00437at 478.788 kb on - strand, within MIT1002_00437at 478.790 kb on + strand, within MIT1002_00437at 478.878 kb on + strand, within MIT1002_00437at 478.991 kb on + strand, within MIT1002_00437at 478.999 kb on - strand, within MIT1002_00437at 478.999 kb on - strand, within MIT1002_00437at 479.029 kb on - strand, within MIT1002_00437at 479.156 kb on - strand, within MIT1002_00437at 479.342 kb on + strand, within MIT1002_00437at 479.350 kb on - strand, within MIT1002_00437at 479.374 kb on + strandat 479.393 kb on + strandat 479.409 kb on - strandat 479.484 kb on - strandat 479.497 kb on + strandat 479.500 kb on - strandat 479.555 kb on + strandat 479.768 kb on - strandat 479.797 kb on - strandat 479.860 kb on + strandat 480.022 kb on + strandat 480.027 kb on + strandat 480.030 kb on - strandat 480.030 kb on - strandat 480.030 kb on - strandat 480.030 kb on - strandat 480.078 kb on - strand, within MIT1002_00438at 480.124 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.136 kb on + strand, within MIT1002_00438at 480.144 kb on - strand, within MIT1002_00438at 480.144 kb on - strand, within MIT1002_00438at 480.144 kb on - strand, within MIT1002_00438at 480.144 kb on - strand, within MIT1002_00438at 480.221 kb on - strand, within MIT1002_00438at 480.231 kb on + strand, within MIT1002_00438at 480.286 kb on + strand, within MIT1002_00438at 480.424 kb on + strand, within MIT1002_00438at 480.432 kb on - strand, within MIT1002_00438at 480.432 kb on - strand, within MIT1002_00438at 480.432 kb on - strand, within MIT1002_00438at 480.479 kb on + strand, within MIT1002_00438

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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477,388 + MIT1002_00436 0.16 -0.9
477,436 + MIT1002_00436 0.21 -1.3
477,444 - MIT1002_00436 0.22 +1.5
477,444 - MIT1002_00436 0.22 -0.7
477,444 - MIT1002_00436 0.22 +0.5
477,446 + MIT1002_00436 0.22 -0.5
477,989 - MIT1002_00436 0.74 -0.4
478,136 + MIT1002_00436 0.89 -2.4
478,324 - -2.9
478,343 - -2.0
478,409 + MIT1002_00437 0.11 -0.4
478,433 - MIT1002_00437 0.13 -3.2
478,443 + MIT1002_00437 0.14 -0.8
478,470 + MIT1002_00437 0.16 +0.5
478,478 - MIT1002_00437 0.17 -2.4
478,478 - MIT1002_00437 0.17 -1.2
478,490 - MIT1002_00437 0.18 -1.9
478,528 + MIT1002_00437 0.21 +1.2
478,570 + MIT1002_00437 0.24 -1.0
478,570 + MIT1002_00437 0.24 -2.0
478,578 - MIT1002_00437 0.25 -3.2
478,578 - MIT1002_00437 0.25 -1.5
478,626 + MIT1002_00437 0.29 -1.7
478,634 - MIT1002_00437 0.30 -1.7
478,642 - MIT1002_00437 0.30 -0.7
478,656 - MIT1002_00437 0.32 -2.4
478,666 + MIT1002_00437 0.32 -2.2
478,666 + MIT1002_00437 0.32 -2.3
478,666 + MIT1002_00437 0.32 -0.7
478,666 + MIT1002_00437 0.32 -1.0
478,666 + MIT1002_00437 0.32 -0.9
478,666 + MIT1002_00437 0.32 -5.9
478,666 + MIT1002_00437 0.32 -4.0
478,666 + MIT1002_00437 0.32 -2.0
478,666 + MIT1002_00437 0.32 -0.7
478,674 - MIT1002_00437 0.33 -1.3
478,674 - MIT1002_00437 0.33 +1.2
478,674 - MIT1002_00437 0.33 -0.3
478,684 - MIT1002_00437 0.34 -3.8
478,780 + MIT1002_00437 0.42 +0.9
478,788 - MIT1002_00437 0.42 +0.5
478,790 + MIT1002_00437 0.43 -1.5
478,878 + MIT1002_00437 0.50 -3.8
478,991 + MIT1002_00437 0.59 -2.0
478,999 - MIT1002_00437 0.60 -0.5
478,999 - MIT1002_00437 0.60 -2.8
479,029 - MIT1002_00437 0.62 -1.2
479,156 - MIT1002_00437 0.73 -0.8
479,342 + MIT1002_00437 0.88 -1.6
479,350 - MIT1002_00437 0.89 +0.9
479,374 + -2.2
479,393 + -0.8
479,409 - +0.5
479,484 - -0.7
479,497 + -2.0
479,500 - -1.7
479,555 + -0.3
479,768 - +0.9
479,797 - -0.6
479,860 + +0.1
480,022 + -0.1
480,027 + -0.2
480,030 - +0.2
480,030 - +0.8
480,030 - +0.7
480,030 - +0.2
480,078 - MIT1002_00438 0.11 +0.3
480,124 + MIT1002_00438 0.15 +2.2
480,136 + MIT1002_00438 0.16 +1.1
480,136 + MIT1002_00438 0.16 +0.9
480,136 + MIT1002_00438 0.16 -0.4
480,136 + MIT1002_00438 0.16 +0.8
480,136 + MIT1002_00438 0.16 -0.2
480,136 + MIT1002_00438 0.16 -0.7
480,136 + MIT1002_00438 0.16 +0.2
480,136 + MIT1002_00438 0.16 -1.3
480,136 + MIT1002_00438 0.16 +0.2
480,136 + MIT1002_00438 0.16 -0.4
480,136 + MIT1002_00438 0.16 -1.1
480,144 - MIT1002_00438 0.17 +0.7
480,144 - MIT1002_00438 0.17 -0.3
480,144 - MIT1002_00438 0.17 -0.8
480,144 - MIT1002_00438 0.17 +2.6
480,221 - MIT1002_00438 0.24 +0.0
480,231 + MIT1002_00438 0.24 -0.9
480,286 + MIT1002_00438 0.29 +0.8
480,424 + MIT1002_00438 0.41 -0.9
480,432 - MIT1002_00438 0.42 +0.3
480,432 - MIT1002_00438 0.42 -1.0
480,432 - MIT1002_00438 0.42 +0.7
480,479 + MIT1002_00438 0.46 -0.2

Or see this region's nucleotide sequence