Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00433

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00431 and MIT1002_00432 are separated by 63 nucleotidesMIT1002_00432 and MIT1002_00433 are separated by 12 nucleotidesMIT1002_00433 and MIT1002_00434 are separated by 65 nucleotidesMIT1002_00434 and MIT1002_00435 are separated by 117 nucleotides MIT1002_00431: MIT1002_00431 - DNA topoisomerase 4 subunit A, at 469,678 to 471,963 _00431 MIT1002_00432: MIT1002_00432 - Heme NO binding protein, at 472,027 to 472,563 _00432 MIT1002_00433: MIT1002_00433 - Cyclic di-GMP phosphodiesterase Gmr, at 472,576 to 474,744 _00433 MIT1002_00434: MIT1002_00434 - hypothetical protein, at 474,810 to 475,616 _00434 MIT1002_00435: MIT1002_00435 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 475,734 to 477,203 _00435 Position (kb) 472 473 474 475Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 472.257 kb on + strand, within MIT1002_00432at 472.257 kb on + strand, within MIT1002_00432at 472.257 kb on + strand, within MIT1002_00432at 472.265 kb on - strand, within MIT1002_00432at 472.267 kb on + strand, within MIT1002_00432at 472.284 kb on + strand, within MIT1002_00432at 472.287 kb on - strand, within MIT1002_00432at 472.287 kb on - strand, within MIT1002_00432at 472.353 kb on + strand, within MIT1002_00432at 472.353 kb on + strand, within MIT1002_00432at 472.361 kb on - strand, within MIT1002_00432at 472.382 kb on - strand, within MIT1002_00432at 472.392 kb on + strand, within MIT1002_00432at 472.400 kb on - strand, within MIT1002_00432at 472.409 kb on - strand, within MIT1002_00432at 472.430 kb on - strand, within MIT1002_00432at 472.430 kb on - strand, within MIT1002_00432at 472.430 kb on - strand, within MIT1002_00432at 472.467 kb on - strand, within MIT1002_00432at 472.467 kb on - strand, within MIT1002_00432at 472.467 kb on - strand, within MIT1002_00432at 472.483 kb on + strand, within MIT1002_00432at 472.491 kb on - strand, within MIT1002_00432at 472.491 kb on - strand, within MIT1002_00432at 472.491 kb on - strand, within MIT1002_00432at 472.536 kb on - strandat 472.536 kb on - strandat 472.536 kb on - strandat 472.586 kb on + strandat 472.586 kb on + strandat 472.638 kb on - strandat 472.679 kb on - strandat 472.808 kb on - strand, within MIT1002_00433at 472.846 kb on + strand, within MIT1002_00433at 472.846 kb on + strand, within MIT1002_00433at 472.864 kb on - strand, within MIT1002_00433at 472.873 kb on - strand, within MIT1002_00433at 472.876 kb on - strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.000 kb on + strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.008 kb on - strand, within MIT1002_00433at 473.036 kb on - strand, within MIT1002_00433at 473.088 kb on + strand, within MIT1002_00433at 473.111 kb on + strand, within MIT1002_00433at 473.162 kb on + strand, within MIT1002_00433at 473.227 kb on + strand, within MIT1002_00433at 473.482 kb on + strand, within MIT1002_00433at 473.522 kb on - strand, within MIT1002_00433at 473.528 kb on - strand, within MIT1002_00433at 473.567 kb on + strand, within MIT1002_00433at 473.608 kb on + strand, within MIT1002_00433at 473.637 kb on + strand, within MIT1002_00433at 473.660 kb on - strand, within MIT1002_00433at 473.725 kb on + strand, within MIT1002_00433at 473.795 kb on - strand, within MIT1002_00433at 473.795 kb on - strand, within MIT1002_00433at 473.810 kb on + strand, within MIT1002_00433at 473.873 kb on + strand, within MIT1002_00433at 473.894 kb on + strand, within MIT1002_00433at 473.919 kb on + strand, within MIT1002_00433at 473.927 kb on - strand, within MIT1002_00433at 473.927 kb on - strand, within MIT1002_00433at 473.953 kb on - strand, within MIT1002_00433at 473.976 kb on + strand, within MIT1002_00433at 473.978 kb on + strand, within MIT1002_00433at 473.997 kb on + strand, within MIT1002_00433at 473.997 kb on + strand, within MIT1002_00433at 473.997 kb on + strand, within MIT1002_00433at 474.002 kb on + strand, within MIT1002_00433at 474.002 kb on + strand, within MIT1002_00433at 474.002 kb on + strand, within MIT1002_00433at 474.005 kb on - strand, within MIT1002_00433at 474.010 kb on - strand, within MIT1002_00433at 474.059 kb on - strand, within MIT1002_00433at 474.074 kb on + strand, within MIT1002_00433at 474.074 kb on + strand, within MIT1002_00433at 474.087 kb on - strand, within MIT1002_00433at 474.087 kb on - strand, within MIT1002_00433at 474.094 kb on + strand, within MIT1002_00433at 474.113 kb on - strand, within MIT1002_00433at 474.118 kb on - strand, within MIT1002_00433at 474.129 kb on - strand, within MIT1002_00433at 474.173 kb on - strand, within MIT1002_00433at 474.236 kb on - strand, within MIT1002_00433at 474.265 kb on + strand, within MIT1002_00433at 474.265 kb on + strand, within MIT1002_00433at 474.273 kb on - strand, within MIT1002_00433at 474.301 kb on + strand, within MIT1002_00433at 474.364 kb on + strand, within MIT1002_00433at 474.407 kb on + strand, within MIT1002_00433at 474.422 kb on + strand, within MIT1002_00433at 474.422 kb on + strand, within MIT1002_00433at 474.430 kb on - strand, within MIT1002_00433at 474.430 kb on - strand, within MIT1002_00433at 474.498 kb on + strand, within MIT1002_00433at 474.506 kb on - strand, within MIT1002_00433at 474.558 kb on + strandat 474.558 kb on + strandat 474.566 kb on - strandat 474.566 kb on - strandat 474.566 kb on - strandat 474.587 kb on - strandat 474.614 kb on + strandat 474.649 kb on - strandat 474.649 kb on - strandat 474.659 kb on - strandat 474.728 kb on - strandat 474.776 kb on + strandat 474.961 kb on - strand, within MIT1002_00434at 475.029 kb on + strand, within MIT1002_00434at 475.062 kb on + strand, within MIT1002_00434at 475.097 kb on + strand, within MIT1002_00434at 475.105 kb on - strand, within MIT1002_00434at 475.183 kb on - strand, within MIT1002_00434at 475.187 kb on - strand, within MIT1002_00434at 475.206 kb on + strand, within MIT1002_00434at 475.364 kb on + strand, within MIT1002_00434at 475.401 kb on + strand, within MIT1002_00434at 475.402 kb on + strand, within MIT1002_00434at 475.532 kb on - strand, within MIT1002_00434at 475.532 kb on - strand, within MIT1002_00434at 475.584 kb on - strandat 475.675 kb on + strandat 475.675 kb on + strandat 475.675 kb on + strandat 475.675 kb on + strandat 475.683 kb on - strandat 475.683 kb on - strandat 475.707 kb on + strandat 475.728 kb on - strandat 475.731 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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472,257 + MIT1002_00432 0.43 -2.1
472,257 + MIT1002_00432 0.43 -0.8
472,257 + MIT1002_00432 0.43 +0.7
472,265 - MIT1002_00432 0.44 +1.5
472,267 + MIT1002_00432 0.45 +1.7
472,284 + MIT1002_00432 0.48 +0.7
472,287 - MIT1002_00432 0.48 -0.0
472,287 - MIT1002_00432 0.48 +1.5
472,353 + MIT1002_00432 0.61 -0.2
472,353 + MIT1002_00432 0.61 +0.9
472,361 - MIT1002_00432 0.62 -2.0
472,382 - MIT1002_00432 0.66 +0.5
472,392 + MIT1002_00432 0.68 +1.1
472,400 - MIT1002_00432 0.69 -0.1
472,409 - MIT1002_00432 0.71 -0.1
472,430 - MIT1002_00432 0.75 -1.6
472,430 - MIT1002_00432 0.75 +0.0
472,430 - MIT1002_00432 0.75 -0.5
472,467 - MIT1002_00432 0.82 -0.4
472,467 - MIT1002_00432 0.82 +0.4
472,467 - MIT1002_00432 0.82 -0.8
472,483 + MIT1002_00432 0.85 +0.1
472,491 - MIT1002_00432 0.86 +0.5
472,491 - MIT1002_00432 0.86 +0.0
472,491 - MIT1002_00432 0.86 +0.9
472,536 - -1.5
472,536 - -1.0
472,536 - -0.3
472,586 + +0.4
472,586 + -1.7
472,638 - +0.2
472,679 - -1.1
472,808 - MIT1002_00433 0.11 +2.2
472,846 + MIT1002_00433 0.12 -1.6
472,846 + MIT1002_00433 0.12 -0.7
472,864 - MIT1002_00433 0.13 +1.1
472,873 - MIT1002_00433 0.14 +0.0
472,876 - MIT1002_00433 0.14 +0.3
473,000 + MIT1002_00433 0.20 -2.9
473,000 + MIT1002_00433 0.20 -0.7
473,000 + MIT1002_00433 0.20 +1.6
473,000 + MIT1002_00433 0.20 -1.9
473,000 + MIT1002_00433 0.20 -2.2
473,000 + MIT1002_00433 0.20 -1.5
473,000 + MIT1002_00433 0.20 -1.4
473,008 - MIT1002_00433 0.20 +1.7
473,008 - MIT1002_00433 0.20 +0.9
473,008 - MIT1002_00433 0.20 -1.6
473,008 - MIT1002_00433 0.20 -2.1
473,008 - MIT1002_00433 0.20 +3.5
473,008 - MIT1002_00433 0.20 -1.4
473,036 - MIT1002_00433 0.21 +1.2
473,088 + MIT1002_00433 0.24 +0.6
473,111 + MIT1002_00433 0.25 +1.1
473,162 + MIT1002_00433 0.27 -1.4
473,227 + MIT1002_00433 0.30 +2.6
473,482 + MIT1002_00433 0.42 -0.1
473,522 - MIT1002_00433 0.44 -0.9
473,528 - MIT1002_00433 0.44 +3.1
473,567 + MIT1002_00433 0.46 +0.1
473,608 + MIT1002_00433 0.48 -0.1
473,637 + MIT1002_00433 0.49 -0.1
473,660 - MIT1002_00433 0.50 +0.1
473,725 + MIT1002_00433 0.53 +0.5
473,795 - MIT1002_00433 0.56 +1.1
473,795 - MIT1002_00433 0.56 +2.3
473,810 + MIT1002_00433 0.57 +0.0
473,873 + MIT1002_00433 0.60 -0.4
473,894 + MIT1002_00433 0.61 -1.0
473,919 + MIT1002_00433 0.62 +0.7
473,927 - MIT1002_00433 0.62 -0.6
473,927 - MIT1002_00433 0.62 +1.1
473,953 - MIT1002_00433 0.63 -0.2
473,976 + MIT1002_00433 0.65 +0.8
473,978 + MIT1002_00433 0.65 -0.7
473,997 + MIT1002_00433 0.66 -0.6
473,997 + MIT1002_00433 0.66 -0.7
473,997 + MIT1002_00433 0.66 -0.6
474,002 + MIT1002_00433 0.66 +2.5
474,002 + MIT1002_00433 0.66 -1.5
474,002 + MIT1002_00433 0.66 -0.3
474,005 - MIT1002_00433 0.66 -0.9
474,010 - MIT1002_00433 0.66 -1.3
474,059 - MIT1002_00433 0.68 +0.1
474,074 + MIT1002_00433 0.69 +0.4
474,074 + MIT1002_00433 0.69 +0.2
474,087 - MIT1002_00433 0.70 +1.0
474,087 - MIT1002_00433 0.70 +0.5
474,094 + MIT1002_00433 0.70 +0.7
474,113 - MIT1002_00433 0.71 -1.3
474,118 - MIT1002_00433 0.71 -1.6
474,129 - MIT1002_00433 0.72 +0.0
474,173 - MIT1002_00433 0.74 -1.9
474,236 - MIT1002_00433 0.77 +1.5
474,265 + MIT1002_00433 0.78 -0.6
474,265 + MIT1002_00433 0.78 +0.7
474,273 - MIT1002_00433 0.78 -0.7
474,301 + MIT1002_00433 0.80 +0.6
474,364 + MIT1002_00433 0.82 -0.5
474,407 + MIT1002_00433 0.84 +2.0
474,422 + MIT1002_00433 0.85 -0.3
474,422 + MIT1002_00433 0.85 -0.7
474,430 - MIT1002_00433 0.85 -1.7
474,430 - MIT1002_00433 0.85 -0.1
474,498 + MIT1002_00433 0.89 -1.4
474,506 - MIT1002_00433 0.89 +1.3
474,558 + +1.4
474,558 + +1.3
474,566 - +1.4
474,566 - +1.6
474,566 - +0.4
474,587 - -0.5
474,614 + -1.2
474,649 - -0.7
474,649 - -2.0
474,659 - -0.5
474,728 - -0.5
474,776 + -1.5
474,961 - MIT1002_00434 0.19 +0.6
475,029 + MIT1002_00434 0.27 +1.7
475,062 + MIT1002_00434 0.31 +0.6
475,097 + MIT1002_00434 0.36 +1.4
475,105 - MIT1002_00434 0.37 +1.7
475,183 - MIT1002_00434 0.46 +0.4
475,187 - MIT1002_00434 0.47 +1.3
475,206 + MIT1002_00434 0.49 +0.8
475,364 + MIT1002_00434 0.69 +1.5
475,401 + MIT1002_00434 0.73 +0.1
475,402 + MIT1002_00434 0.73 +1.3
475,532 - MIT1002_00434 0.89 +0.8
475,532 - MIT1002_00434 0.89 +0.5
475,584 - +1.5
475,675 + +0.9
475,675 + -1.1
475,675 + -0.9
475,675 + +1.0
475,683 - +1.4
475,683 - -0.2
475,707 + +0.7
475,728 - -0.5
475,731 + +0.4

Or see this region's nucleotide sequence