Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00413 and MIT1002_00414 are separated by 228 nucleotides MIT1002_00414 and MIT1002_00415 are separated by 49 nucleotides MIT1002_00415 and MIT1002_00416 are separated by 242 nucleotides MIT1002_00416 and MIT1002_00417 are separated by 32 nucleotides
MIT1002_00413: MIT1002_00413 - Extracellular ribonuclease precursor, at 445,361 to 447,001
_00413
MIT1002_00414: MIT1002_00414 - Bacillibactin transport regulator, at 447,230 to 447,949
_00414
MIT1002_00415: MIT1002_00415 - hypothetical protein, at 447,999 to 448,853
_00415
MIT1002_00416: MIT1002_00416 - Nitrogen regulatory protein P-II 2, at 449,096 to 449,434
_00416
MIT1002_00417: MIT1002_00417 - Ammonia transporter, at 449,467 to 450,714
_00417
Position (kb) 447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 447.056 kb on + strand at 447.064 kb on - strand at 447.137 kb on + strand at 447.145 kb on - strand at 447.191 kb on + strand at 447.213 kb on + strand at 447.248 kb on - strand at 447.265 kb on + strand at 447.265 kb on + strand at 447.267 kb on + strand at 447.304 kb on + strand, within MIT1002_00414 at 447.312 kb on - strand, within MIT1002_00414 at 447.317 kb on - strand, within MIT1002_00414 at 447.385 kb on + strand, within MIT1002_00414 at 447.391 kb on - strand, within MIT1002_00414 at 447.393 kb on - strand, within MIT1002_00414 at 447.510 kb on + strand, within MIT1002_00414 at 447.518 kb on - strand, within MIT1002_00414 at 447.518 kb on - strand, within MIT1002_00414 at 447.574 kb on - strand, within MIT1002_00414 at 447.574 kb on - strand, within MIT1002_00414 at 447.664 kb on - strand, within MIT1002_00414 at 447.671 kb on - strand, within MIT1002_00414 at 447.690 kb on + strand, within MIT1002_00414 at 447.690 kb on + strand, within MIT1002_00414 at 447.690 kb on + strand, within MIT1002_00414 at 447.690 kb on + strand, within MIT1002_00414 at 447.698 kb on - strand, within MIT1002_00414 at 447.698 kb on - strand, within MIT1002_00414 at 447.698 kb on - strand, within MIT1002_00414 at 447.700 kb on + strand, within MIT1002_00414 at 447.708 kb on - strand, within MIT1002_00414 at 447.724 kb on + strand, within MIT1002_00414 at 447.739 kb on + strand, within MIT1002_00414 at 447.789 kb on - strand, within MIT1002_00414 at 447.811 kb on + strand, within MIT1002_00414 at 447.811 kb on + strand, within MIT1002_00414 at 447.850 kb on + strand, within MIT1002_00414 at 447.855 kb on - strand, within MIT1002_00414 at 447.860 kb on - strand, within MIT1002_00414 at 447.860 kb on - strand, within MIT1002_00414 at 447.860 kb on - strand, within MIT1002_00414 at 447.932 kb on - strand at 447.932 kb on - strand at 447.967 kb on - strand at 447.973 kb on - strand at 447.974 kb on - strand at 448.156 kb on - strand, within MIT1002_00415 at 448.205 kb on + strand, within MIT1002_00415 at 448.213 kb on - strand, within MIT1002_00415 at 448.255 kb on - strand, within MIT1002_00415 at 448.288 kb on + strand, within MIT1002_00415 at 448.290 kb on + strand, within MIT1002_00415 at 448.290 kb on + strand, within MIT1002_00415 at 448.290 kb on + strand, within MIT1002_00415 at 448.363 kb on + strand, within MIT1002_00415 at 448.375 kb on + strand, within MIT1002_00415 at 448.383 kb on - strand, within MIT1002_00415 at 448.383 kb on - strand, within MIT1002_00415 at 448.412 kb on - strand, within MIT1002_00415 at 448.512 kb on - strand, within MIT1002_00415 at 448.569 kb on - strand, within MIT1002_00415 at 448.569 kb on - strand, within MIT1002_00415 at 448.574 kb on - strand, within MIT1002_00415 at 448.579 kb on + strand, within MIT1002_00415 at 448.579 kb on - strand, within MIT1002_00415 at 448.579 kb on - strand, within MIT1002_00415 at 448.579 kb on - strand, within MIT1002_00415 at 448.586 kb on + strand, within MIT1002_00415 at 448.678 kb on + strand, within MIT1002_00415 at 448.706 kb on + strand, within MIT1002_00415 at 448.706 kb on + strand, within MIT1002_00415 at 448.706 kb on + strand, within MIT1002_00415 at 448.706 kb on - strand, within MIT1002_00415 at 448.709 kb on - strand, within MIT1002_00415 at 448.714 kb on - strand, within MIT1002_00415 at 448.714 kb on - strand, within MIT1002_00415 at 448.714 kb on - strand, within MIT1002_00415 at 448.714 kb on - strand, within MIT1002_00415 at 448.714 kb on - strand, within MIT1002_00415 at 448.766 kb on + strand, within MIT1002_00415 at 448.766 kb on + strand, within MIT1002_00415 at 448.774 kb on - strand at 448.779 kb on - strand at 448.821 kb on + strand at 448.826 kb on - strand at 448.878 kb on + strand at 448.878 kb on + strand at 448.878 kb on + strand at 448.886 kb on - strand at 448.886 kb on - strand at 448.886 kb on - strand at 448.886 kb on - strand at 448.896 kb on + strand at 448.937 kb on + strand at 449.124 kb on - strand at 449.133 kb on - strand, within MIT1002_00416 at 449.192 kb on + strand, within MIT1002_00416 at 449.207 kb on - strand, within MIT1002_00416 at 449.207 kb on - strand, within MIT1002_00416 at 449.322 kb on - strand, within MIT1002_00416 at 449.379 kb on + strand, within MIT1002_00416 at 449.379 kb on + strand, within MIT1002_00416 at 449.379 kb on + strand, within MIT1002_00416 at 449.380 kb on - strand, within MIT1002_00416 at 449.387 kb on - strand, within MIT1002_00416 at 449.393 kb on + strand, within MIT1002_00416 at 449.429 kb on + strand at 449.429 kb on + strand at 449.429 kb on + strand at 449.437 kb on - strand at 449.532 kb on + strand at 449.535 kb on - strand at 449.570 kb on - strand at 449.572 kb on + strand at 449.572 kb on + strand at 449.572 kb on + strand at 449.572 kb on + strand at 449.580 kb on - strand at 449.580 kb on - strand at 449.580 kb on - strand at 449.625 kb on + strand, within MIT1002_00417 at 449.642 kb on - strand, within MIT1002_00417 at 449.642 kb on - strand, within MIT1002_00417 at 449.644 kb on + strand, within MIT1002_00417 at 449.671 kb on + strand, within MIT1002_00417 at 449.731 kb on - strand, within MIT1002_00417 at 449.793 kb on - strand, within MIT1002_00417 at 449.852 kb on - strand, within MIT1002_00417
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 447,056 + -0.6 447,064 - -1.4 447,137 + -0.7 447,145 - +1.6 447,191 + +0.4 447,213 + +0.6 447,248 - -0.1 447,265 + +0.7 447,265 + -1.3 447,267 + -0.4 447,304 + MIT1002_00414 0.10 +1.9 447,312 - MIT1002_00414 0.11 -0.0 447,317 - MIT1002_00414 0.12 -0.4 447,385 + MIT1002_00414 0.22 +1.0 447,391 - MIT1002_00414 0.22 +0.6 447,393 - MIT1002_00414 0.23 +0.7 447,510 + MIT1002_00414 0.39 +1.6 447,518 - MIT1002_00414 0.40 +0.6 447,518 - MIT1002_00414 0.40 -0.2 447,574 - MIT1002_00414 0.48 -0.8 447,574 - MIT1002_00414 0.48 +2.0 447,664 - MIT1002_00414 0.60 +1.2 447,671 - MIT1002_00414 0.61 +0.7 447,690 + MIT1002_00414 0.64 -0.4 447,690 + MIT1002_00414 0.64 -1.0 447,690 + MIT1002_00414 0.64 +0.1 447,690 + MIT1002_00414 0.64 +0.8 447,698 - MIT1002_00414 0.65 +0.9 447,698 - MIT1002_00414 0.65 -1.4 447,698 - MIT1002_00414 0.65 -0.8 447,700 + MIT1002_00414 0.65 +0.0 447,708 - MIT1002_00414 0.66 +1.3 447,724 + MIT1002_00414 0.69 +0.3 447,739 + MIT1002_00414 0.71 -0.1 447,789 - MIT1002_00414 0.78 -3.3 447,811 + MIT1002_00414 0.81 -1.0 447,811 + MIT1002_00414 0.81 +0.0 447,850 + MIT1002_00414 0.86 +1.9 447,855 - MIT1002_00414 0.87 +0.6 447,860 - MIT1002_00414 0.88 +1.5 447,860 - MIT1002_00414 0.88 +0.9 447,860 - MIT1002_00414 0.88 -1.7 447,932 - -0.3 447,932 - +0.7 447,967 - -0.8 447,973 - +0.6 447,974 - +0.8 448,156 - MIT1002_00415 0.18 +0.1 448,205 + MIT1002_00415 0.24 -0.6 448,213 - MIT1002_00415 0.25 +2.3 448,255 - MIT1002_00415 0.30 +0.7 448,288 + MIT1002_00415 0.34 -0.2 448,290 + MIT1002_00415 0.34 -0.1 448,290 + MIT1002_00415 0.34 -0.4 448,290 + MIT1002_00415 0.34 +1.5 448,363 + MIT1002_00415 0.43 +0.8 448,375 + MIT1002_00415 0.44 +0.5 448,383 - MIT1002_00415 0.45 +1.0 448,383 - MIT1002_00415 0.45 +0.9 448,412 - MIT1002_00415 0.48 -2.2 448,512 - MIT1002_00415 0.60 -2.0 448,569 - MIT1002_00415 0.67 +2.0 448,569 - MIT1002_00415 0.67 -0.5 448,574 - MIT1002_00415 0.67 +1.2 448,579 + MIT1002_00415 0.68 +0.4 448,579 - MIT1002_00415 0.68 +2.0 448,579 - MIT1002_00415 0.68 -1.1 448,579 - MIT1002_00415 0.68 +0.1 448,586 + MIT1002_00415 0.69 -0.1 448,678 + MIT1002_00415 0.79 -1.0 448,706 + MIT1002_00415 0.83 -0.2 448,706 + MIT1002_00415 0.83 +0.2 448,706 + MIT1002_00415 0.83 -0.1 448,706 - MIT1002_00415 0.83 -0.9 448,709 - MIT1002_00415 0.83 -0.2 448,714 - MIT1002_00415 0.84 +1.2 448,714 - MIT1002_00415 0.84 +0.0 448,714 - MIT1002_00415 0.84 +1.3 448,714 - MIT1002_00415 0.84 -1.3 448,714 - MIT1002_00415 0.84 +3.5 448,766 + MIT1002_00415 0.90 +2.1 448,766 + MIT1002_00415 0.90 +0.7 448,774 - +0.2 448,779 - +1.8 448,821 + +1.2 448,826 - +1.3 448,878 + +0.7 448,878 + -1.3 448,878 + -0.2 448,886 - +1.2 448,886 - +0.4 448,886 - +0.7 448,886 - +1.1 448,896 + +0.9 448,937 + +0.3 449,124 - +0.8 449,133 - MIT1002_00416 0.11 +0.4 449,192 + MIT1002_00416 0.28 -0.7 449,207 - MIT1002_00416 0.33 +0.5 449,207 - MIT1002_00416 0.33 -0.7 449,322 - MIT1002_00416 0.67 -0.2 449,379 + MIT1002_00416 0.83 +0.0 449,379 + MIT1002_00416 0.83 +0.3 449,379 + MIT1002_00416 0.83 +1.6 449,380 - MIT1002_00416 0.84 -2.3 449,387 - MIT1002_00416 0.86 -0.1 449,393 + MIT1002_00416 0.88 +0.8 449,429 + -0.8 449,429 + +1.7 449,429 + +1.4 449,437 - -0.4 449,532 + +0.9 449,535 - +0.5 449,570 - +0.4 449,572 + +1.3 449,572 + -0.3 449,572 + +1.3 449,572 + -0.4 449,580 - -0.7 449,580 - +0.2 449,580 - -0.2 449,625 + MIT1002_00417 0.13 +2.2 449,642 - MIT1002_00417 0.14 +0.5 449,642 - MIT1002_00417 0.14 -0.9 449,644 + MIT1002_00417 0.14 -0.6 449,671 + MIT1002_00417 0.16 +1.1 449,731 - MIT1002_00417 0.21 -0.7 449,793 - MIT1002_00417 0.26 -0.4 449,852 - MIT1002_00417 0.31 +0.0
Or see this region's nucleotide sequence