Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00409 and MIT1002_00410 are separated by 145 nucleotides MIT1002_00410 and MIT1002_00411 are separated by 11 nucleotides MIT1002_00411 and MIT1002_00412 are separated by 372 nucleotides
MIT1002_00409: MIT1002_00409 - Murein polymerase, at 440,949 to 443,300
_00409
MIT1002_00410: MIT1002_00410 - hypothetical protein, at 443,446 to 443,556
_00410
MIT1002_00411: MIT1002_00411 - hypothetical protein, at 443,568 to 443,852
_00411
MIT1002_00412: MIT1002_00412 - Inner membrane protein YedI, at 444,225 to 445,148
_00412
Position (kb) 443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.450 kb on + strand, within MIT1002_00409 at 442.506 kb on + strand, within MIT1002_00409 at 442.516 kb on - strand, within MIT1002_00409 at 442.591 kb on - strand, within MIT1002_00409 at 442.601 kb on + strand, within MIT1002_00409 at 442.653 kb on + strand, within MIT1002_00409 at 442.655 kb on - strand, within MIT1002_00409 at 442.661 kb on + strand, within MIT1002_00409 at 442.683 kb on + strand, within MIT1002_00409 at 442.685 kb on + strand, within MIT1002_00409 at 442.712 kb on - strand, within MIT1002_00409 at 442.712 kb on - strand, within MIT1002_00409 at 442.761 kb on - strand, within MIT1002_00409 at 442.811 kb on + strand, within MIT1002_00409 at 442.819 kb on - strand, within MIT1002_00409 at 442.853 kb on + strand, within MIT1002_00409 at 442.941 kb on - strand, within MIT1002_00409 at 443.040 kb on + strand, within MIT1002_00409 at 443.040 kb on + strand, within MIT1002_00409 at 443.040 kb on + strand, within MIT1002_00409 at 443.093 kb on - strand at 443.115 kb on + strand at 443.115 kb on + strand at 443.115 kb on + strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.162 kb on - strand at 443.241 kb on + strand at 443.350 kb on - strand at 443.356 kb on - strand at 443.472 kb on - strand, within MIT1002_00410 at 443.506 kb on + strand, within MIT1002_00410 at 443.541 kb on - strand, within MIT1002_00410 at 443.582 kb on + strand at 443.590 kb on - strand at 443.614 kb on - strand, within MIT1002_00411 at 443.707 kb on - strand, within MIT1002_00411 at 443.719 kb on - strand, within MIT1002_00411 at 443.794 kb on - strand, within MIT1002_00411 at 443.799 kb on + strand, within MIT1002_00411 at 443.810 kb on + strand, within MIT1002_00411 at 443.825 kb on - strand at 443.877 kb on + strand at 443.883 kb on + strand at 443.905 kb on + strand at 443.965 kb on - strand at 444.145 kb on - strand at 444.186 kb on + strand at 444.205 kb on + strand at 444.207 kb on + strand at 444.213 kb on - strand at 444.230 kb on - strand at 444.304 kb on - strand at 444.401 kb on + strand, within MIT1002_00412 at 444.440 kb on - strand, within MIT1002_00412 at 444.456 kb on - strand, within MIT1002_00412 at 444.480 kb on - strand, within MIT1002_00412 at 444.482 kb on - strand, within MIT1002_00412 at 444.510 kb on + strand, within MIT1002_00412 at 444.528 kb on - strand, within MIT1002_00412 at 444.545 kb on + strand, within MIT1002_00412 at 444.553 kb on - strand, within MIT1002_00412 at 444.553 kb on - strand, within MIT1002_00412 at 444.553 kb on - strand, within MIT1002_00412
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 442,450 + MIT1002_00409 0.64 -0.5 442,506 + MIT1002_00409 0.66 -0.6 442,516 - MIT1002_00409 0.67 -2.1 442,591 - MIT1002_00409 0.70 +1.5 442,601 + MIT1002_00409 0.70 -0.5 442,653 + MIT1002_00409 0.72 -0.4 442,655 - MIT1002_00409 0.73 -0.9 442,661 + MIT1002_00409 0.73 -0.2 442,683 + MIT1002_00409 0.74 -1.1 442,685 + MIT1002_00409 0.74 -1.4 442,712 - MIT1002_00409 0.75 -1.7 442,712 - MIT1002_00409 0.75 -1.0 442,761 - MIT1002_00409 0.77 -1.9 442,811 + MIT1002_00409 0.79 -1.1 442,819 - MIT1002_00409 0.80 +0.9 442,853 + MIT1002_00409 0.81 -1.6 442,941 - MIT1002_00409 0.85 -2.9 443,040 + MIT1002_00409 0.89 -0.6 443,040 + MIT1002_00409 0.89 -1.0 443,040 + MIT1002_00409 0.89 -1.5 443,093 - -0.4 443,115 + -1.2 443,115 + +0.7 443,115 + -1.7 443,123 - -0.6 443,123 - +1.2 443,123 - +0.7 443,123 - +1.5 443,123 - -1.2 443,123 - -0.4 443,162 - +0.3 443,241 + +2.0 443,350 - +1.0 443,356 - -1.3 443,472 - MIT1002_00410 0.23 +0.0 443,506 + MIT1002_00410 0.54 -2.2 443,541 - MIT1002_00410 0.86 -0.4 443,582 + -1.6 443,590 - +0.9 443,614 - MIT1002_00411 0.16 -1.2 443,707 - MIT1002_00411 0.49 -0.9 443,719 - MIT1002_00411 0.53 +0.7 443,794 - MIT1002_00411 0.79 +0.1 443,799 + MIT1002_00411 0.81 +0.5 443,810 + MIT1002_00411 0.85 +0.4 443,825 - +0.2 443,877 + +2.0 443,883 + +1.0 443,905 + +0.3 443,965 - -0.5 444,145 - +0.3 444,186 + -1.0 444,205 + +0.3 444,207 + +0.7 444,213 - -0.3 444,230 - -1.7 444,304 - -0.0 444,401 + MIT1002_00412 0.19 +1.2 444,440 - MIT1002_00412 0.23 +0.5 444,456 - MIT1002_00412 0.25 +0.5 444,480 - MIT1002_00412 0.28 -1.9 444,482 - MIT1002_00412 0.28 +0.0 444,510 + MIT1002_00412 0.31 -0.4 444,528 - MIT1002_00412 0.33 -0.9 444,545 + MIT1002_00412 0.35 +0.5 444,553 - MIT1002_00412 0.35 +0.9 444,553 - MIT1002_00412 0.35 -0.1 444,553 - MIT1002_00412 0.35 +0.3
Or see this region's nucleotide sequence