Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00408 and MIT1002_00409 are separated by 267 nucleotides MIT1002_00409 and MIT1002_00410 are separated by 145 nucleotides MIT1002_00410 and MIT1002_00411 are separated by 11 nucleotides MIT1002_00411 and MIT1002_00412 are separated by 372 nucleotides
MIT1002_00408: MIT1002_00408 - Membrane-bound lytic murein transglycosylase B precursor, at 439,398 to 440,681
_00408
MIT1002_00409: MIT1002_00409 - Murein polymerase, at 440,949 to 443,300
_00409
MIT1002_00410: MIT1002_00410 - hypothetical protein, at 443,446 to 443,556
_00410
MIT1002_00411: MIT1002_00411 - hypothetical protein, at 443,568 to 443,852
_00411
MIT1002_00412: MIT1002_00412 - Inner membrane protein YedI, at 444,225 to 445,148
_00412
Position (kb) 440
441
442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.021 kb on - strand, within MIT1002_00408 at 440.031 kb on + strand, within MIT1002_00408 at 440.035 kb on - strand, within MIT1002_00408 at 440.061 kb on + strand, within MIT1002_00408 at 440.069 kb on - strand, within MIT1002_00408 at 440.113 kb on - strand, within MIT1002_00408 at 440.125 kb on - strand, within MIT1002_00408 at 440.180 kb on + strand, within MIT1002_00408 at 440.328 kb on - strand, within MIT1002_00408 at 440.334 kb on + strand, within MIT1002_00408 at 440.412 kb on + strand, within MIT1002_00408 at 440.420 kb on - strand, within MIT1002_00408 at 440.424 kb on + strand, within MIT1002_00408 at 440.430 kb on + strand, within MIT1002_00408 at 440.430 kb on + strand, within MIT1002_00408 at 440.482 kb on - strand, within MIT1002_00408 at 440.482 kb on - strand, within MIT1002_00408 at 440.510 kb on + strand, within MIT1002_00408 at 440.551 kb on - strand, within MIT1002_00408 at 440.614 kb on + strand at 440.620 kb on + strand at 440.649 kb on + strand at 440.722 kb on - strand at 440.781 kb on - strand at 440.783 kb on + strand at 440.791 kb on - strand at 440.798 kb on + strand at 440.828 kb on + strand at 440.828 kb on + strand at 440.833 kb on - strand at 441.084 kb on - strand at 441.155 kb on + strand at 441.186 kb on + strand, within MIT1002_00409 at 441.300 kb on + strand, within MIT1002_00409 at 441.308 kb on - strand, within MIT1002_00409 at 441.331 kb on + strand, within MIT1002_00409 at 441.331 kb on + strand, within MIT1002_00409 at 441.339 kb on - strand, within MIT1002_00409 at 441.339 kb on - strand, within MIT1002_00409 at 441.347 kb on - strand, within MIT1002_00409 at 441.347 kb on - strand, within MIT1002_00409 at 441.439 kb on + strand, within MIT1002_00409 at 441.523 kb on + strand, within MIT1002_00409 at 441.582 kb on + strand, within MIT1002_00409 at 441.583 kb on - strand, within MIT1002_00409 at 441.632 kb on - strand, within MIT1002_00409 at 441.817 kb on + strand, within MIT1002_00409 at 441.825 kb on - strand, within MIT1002_00409 at 441.825 kb on - strand, within MIT1002_00409 at 441.825 kb on - strand, within MIT1002_00409 at 441.943 kb on + strand, within MIT1002_00409 at 441.951 kb on - strand, within MIT1002_00409 at 442.067 kb on + strand, within MIT1002_00409 at 442.074 kb on - strand, within MIT1002_00409 at 442.097 kb on - strand, within MIT1002_00409 at 442.135 kb on - strand, within MIT1002_00409 at 442.165 kb on - strand, within MIT1002_00409 at 442.187 kb on - strand, within MIT1002_00409 at 442.221 kb on - strand, within MIT1002_00409 at 442.329 kb on + strand, within MIT1002_00409 at 442.329 kb on + strand, within MIT1002_00409 at 442.373 kb on + strand, within MIT1002_00409 at 442.399 kb on + strand, within MIT1002_00409 at 442.407 kb on - strand, within MIT1002_00409 at 442.416 kb on + strand, within MIT1002_00409 at 442.450 kb on + strand, within MIT1002_00409 at 442.506 kb on + strand, within MIT1002_00409 at 442.516 kb on - strand, within MIT1002_00409 at 442.591 kb on - strand, within MIT1002_00409 at 442.601 kb on + strand, within MIT1002_00409 at 442.653 kb on + strand, within MIT1002_00409 at 442.655 kb on - strand, within MIT1002_00409 at 442.661 kb on + strand, within MIT1002_00409 at 442.683 kb on + strand, within MIT1002_00409 at 442.685 kb on + strand, within MIT1002_00409 at 442.712 kb on - strand, within MIT1002_00409 at 442.712 kb on - strand, within MIT1002_00409 at 442.761 kb on - strand, within MIT1002_00409 at 442.811 kb on + strand, within MIT1002_00409 at 442.819 kb on - strand, within MIT1002_00409 at 442.853 kb on + strand, within MIT1002_00409 at 442.941 kb on - strand, within MIT1002_00409 at 443.040 kb on + strand, within MIT1002_00409 at 443.040 kb on + strand, within MIT1002_00409 at 443.040 kb on + strand, within MIT1002_00409 at 443.093 kb on - strand at 443.115 kb on + strand at 443.115 kb on + strand at 443.115 kb on + strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.123 kb on - strand at 443.162 kb on - strand at 443.241 kb on + strand at 443.350 kb on - strand at 443.356 kb on - strand at 443.472 kb on - strand, within MIT1002_00410 at 443.506 kb on + strand, within MIT1002_00410 at 443.541 kb on - strand, within MIT1002_00410 at 443.582 kb on + strand at 443.590 kb on - strand at 443.614 kb on - strand, within MIT1002_00411 at 443.707 kb on - strand, within MIT1002_00411 at 443.719 kb on - strand, within MIT1002_00411 at 443.794 kb on - strand, within MIT1002_00411 at 443.799 kb on + strand, within MIT1002_00411 at 443.810 kb on + strand, within MIT1002_00411 at 443.825 kb on - strand at 443.877 kb on + strand at 443.883 kb on + strand at 443.905 kb on + strand at 443.965 kb on - strand at 444.145 kb on - strand at 444.186 kb on + strand at 444.205 kb on + strand at 444.207 kb on + strand at 444.213 kb on - strand at 444.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 440,021 - MIT1002_00408 0.49 -0.4 440,031 + MIT1002_00408 0.49 +1.0 440,035 - MIT1002_00408 0.50 +0.1 440,061 + MIT1002_00408 0.52 -1.2 440,069 - MIT1002_00408 0.52 -0.9 440,113 - MIT1002_00408 0.56 -1.7 440,125 - MIT1002_00408 0.57 -1.5 440,180 + MIT1002_00408 0.61 -1.7 440,328 - MIT1002_00408 0.72 -1.9 440,334 + MIT1002_00408 0.73 +0.2 440,412 + MIT1002_00408 0.79 +0.1 440,420 - MIT1002_00408 0.80 -0.4 440,424 + MIT1002_00408 0.80 +0.1 440,430 + MIT1002_00408 0.80 +0.1 440,430 + MIT1002_00408 0.80 -1.8 440,482 - MIT1002_00408 0.84 -0.8 440,482 - MIT1002_00408 0.84 -2.1 440,510 + MIT1002_00408 0.87 -0.9 440,551 - MIT1002_00408 0.90 +0.1 440,614 + -0.8 440,620 + -0.6 440,649 + +0.4 440,722 - +0.5 440,781 - +0.0 440,783 + +0.5 440,791 - -1.3 440,798 + -1.1 440,828 + +1.4 440,828 + -1.6 440,833 - +0.7 441,084 - +1.5 441,155 + -1.1 441,186 + MIT1002_00409 0.10 -1.5 441,300 + MIT1002_00409 0.15 -1.5 441,308 - MIT1002_00409 0.15 -0.1 441,331 + MIT1002_00409 0.16 -1.6 441,331 + MIT1002_00409 0.16 +0.9 441,339 - MIT1002_00409 0.17 -0.7 441,339 - MIT1002_00409 0.17 -0.9 441,347 - MIT1002_00409 0.17 -1.2 441,347 - MIT1002_00409 0.17 -0.7 441,439 + MIT1002_00409 0.21 -0.2 441,523 + MIT1002_00409 0.24 -1.4 441,582 + MIT1002_00409 0.27 -0.8 441,583 - MIT1002_00409 0.27 -0.7 441,632 - MIT1002_00409 0.29 -1.1 441,817 + MIT1002_00409 0.37 +2.1 441,825 - MIT1002_00409 0.37 +0.3 441,825 - MIT1002_00409 0.37 -0.9 441,825 - MIT1002_00409 0.37 -1.5 441,943 + MIT1002_00409 0.42 -1.6 441,951 - MIT1002_00409 0.43 +0.2 442,067 + MIT1002_00409 0.48 -1.7 442,074 - MIT1002_00409 0.48 -0.9 442,097 - MIT1002_00409 0.49 -0.7 442,135 - MIT1002_00409 0.50 +0.5 442,165 - MIT1002_00409 0.52 -0.4 442,187 - MIT1002_00409 0.53 +0.5 442,221 - MIT1002_00409 0.54 -0.7 442,329 + MIT1002_00409 0.59 -0.8 442,329 + MIT1002_00409 0.59 -1.5 442,373 + MIT1002_00409 0.61 -1.7 442,399 + MIT1002_00409 0.62 -1.9 442,407 - MIT1002_00409 0.62 -0.9 442,416 + MIT1002_00409 0.62 +0.7 442,450 + MIT1002_00409 0.64 -0.5 442,506 + MIT1002_00409 0.66 -0.6 442,516 - MIT1002_00409 0.67 -2.1 442,591 - MIT1002_00409 0.70 +1.5 442,601 + MIT1002_00409 0.70 -0.5 442,653 + MIT1002_00409 0.72 -0.4 442,655 - MIT1002_00409 0.73 -0.9 442,661 + MIT1002_00409 0.73 -0.2 442,683 + MIT1002_00409 0.74 -1.1 442,685 + MIT1002_00409 0.74 -1.4 442,712 - MIT1002_00409 0.75 -1.7 442,712 - MIT1002_00409 0.75 -1.0 442,761 - MIT1002_00409 0.77 -1.9 442,811 + MIT1002_00409 0.79 -1.1 442,819 - MIT1002_00409 0.80 +0.9 442,853 + MIT1002_00409 0.81 -1.6 442,941 - MIT1002_00409 0.85 -2.9 443,040 + MIT1002_00409 0.89 -0.6 443,040 + MIT1002_00409 0.89 -1.0 443,040 + MIT1002_00409 0.89 -1.5 443,093 - -0.4 443,115 + -1.2 443,115 + +0.7 443,115 + -1.7 443,123 - -0.6 443,123 - +1.2 443,123 - +0.7 443,123 - +1.5 443,123 - -1.2 443,123 - -0.4 443,162 - +0.3 443,241 + +2.0 443,350 - +1.0 443,356 - -1.3 443,472 - MIT1002_00410 0.23 +0.0 443,506 + MIT1002_00410 0.54 -2.2 443,541 - MIT1002_00410 0.86 -0.4 443,582 + -1.6 443,590 - +0.9 443,614 - MIT1002_00411 0.16 -1.2 443,707 - MIT1002_00411 0.49 -0.9 443,719 - MIT1002_00411 0.53 +0.7 443,794 - MIT1002_00411 0.79 +0.1 443,799 + MIT1002_00411 0.81 +0.5 443,810 + MIT1002_00411 0.85 +0.4 443,825 - +0.2 443,877 + +2.0 443,883 + +1.0 443,905 + +0.3 443,965 - -0.5 444,145 - +0.3 444,186 + -1.0 444,205 + +0.3 444,207 + +0.7 444,213 - -0.3 444,230 - -1.7
Or see this region's nucleotide sequence