Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00382

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00380 and MIT1002_00381 are separated by 61 nucleotidesMIT1002_00381 and MIT1002_00382 are separated by 109 nucleotidesMIT1002_00382 and MIT1002_00383 are separated by 388 nucleotidesMIT1002_00383 and MIT1002_00384 are separated by 18 nucleotides MIT1002_00380: MIT1002_00380 - Aconitate hydratase 1, at 410,415 to 413,132 _00380 MIT1002_00381: MIT1002_00381 - hypothetical protein, at 413,194 to 413,688 _00381 MIT1002_00382: MIT1002_00382 - Type II traffic warden ATPase, at 413,798 to 416,056 _00382 MIT1002_00383: MIT1002_00383 - 30S ribosomal protein S10, at 416,445 to 416,756 _00383 MIT1002_00384: MIT1002_00384 - 50S ribosomal protein L3, at 416,775 to 417,413 _00384 Position (kb) 413 414 415 416 417Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 412.803 kb on + strand, within MIT1002_00380at 412.826 kb on + strand, within MIT1002_00380at 412.834 kb on - strand, within MIT1002_00380at 412.836 kb on + strand, within MIT1002_00380at 412.836 kb on + strand, within MIT1002_00380at 412.850 kb on - strand, within MIT1002_00380at 412.867 kb on + strandat 412.867 kb on + strandat 412.867 kb on + strandat 412.867 kb on + strandat 412.875 kb on - strandat 412.875 kb on - strandat 412.875 kb on - strandat 412.875 kb on - strandat 412.877 kb on + strandat 412.880 kb on - strandat 412.909 kb on + strandat 412.977 kb on - strandat 413.059 kb on + strandat 413.150 kb on - strandat 413.150 kb on - strandat 413.150 kb on - strandat 413.150 kb on - strandat 413.150 kb on - strandat 413.150 kb on - strandat 413.274 kb on - strand, within MIT1002_00381at 413.306 kb on + strand, within MIT1002_00381at 413.306 kb on + strand, within MIT1002_00381at 413.321 kb on + strand, within MIT1002_00381at 413.346 kb on - strand, within MIT1002_00381at 413.356 kb on - strand, within MIT1002_00381at 413.411 kb on - strand, within MIT1002_00381at 413.421 kb on - strand, within MIT1002_00381at 413.421 kb on - strand, within MIT1002_00381at 413.649 kb on - strandat 413.795 kb on + strandat 413.838 kb on - strandat 413.849 kb on - strandat 413.877 kb on - strandat 413.898 kb on + strandat 413.963 kb on + strandat 413.980 kb on + strandat 413.993 kb on + strandat 414.176 kb on - strand, within MIT1002_00382at 414.195 kb on + strand, within MIT1002_00382at 414.250 kb on + strand, within MIT1002_00382at 414.252 kb on - strand, within MIT1002_00382at 414.267 kb on + strand, within MIT1002_00382at 414.268 kb on + strand, within MIT1002_00382at 414.268 kb on + strand, within MIT1002_00382at 414.275 kb on - strand, within MIT1002_00382at 414.276 kb on - strand, within MIT1002_00382at 414.276 kb on - strand, within MIT1002_00382at 414.277 kb on + strand, within MIT1002_00382at 414.277 kb on + strand, within MIT1002_00382at 414.285 kb on - strand, within MIT1002_00382at 414.285 kb on - strand, within MIT1002_00382at 414.335 kb on + strand, within MIT1002_00382at 414.368 kb on - strand, within MIT1002_00382at 414.388 kb on - strand, within MIT1002_00382at 414.430 kb on + strand, within MIT1002_00382at 414.430 kb on + strand, within MIT1002_00382at 414.438 kb on - strand, within MIT1002_00382at 414.503 kb on + strand, within MIT1002_00382at 414.511 kb on - strand, within MIT1002_00382at 414.511 kb on - strand, within MIT1002_00382at 414.513 kb on + strand, within MIT1002_00382at 414.527 kb on + strand, within MIT1002_00382at 414.535 kb on - strand, within MIT1002_00382at 414.613 kb on + strand, within MIT1002_00382at 414.626 kb on - strand, within MIT1002_00382at 414.696 kb on - strand, within MIT1002_00382at 414.790 kb on + strand, within MIT1002_00382at 414.795 kb on + strand, within MIT1002_00382at 414.795 kb on + strand, within MIT1002_00382at 414.822 kb on - strand, within MIT1002_00382at 414.836 kb on - strand, within MIT1002_00382at 414.857 kb on + strand, within MIT1002_00382at 414.874 kb on + strand, within MIT1002_00382at 414.885 kb on - strand, within MIT1002_00382at 414.968 kb on + strand, within MIT1002_00382at 414.968 kb on + strand, within MIT1002_00382at 414.970 kb on + strand, within MIT1002_00382at 415.118 kb on + strand, within MIT1002_00382at 415.123 kb on + strand, within MIT1002_00382at 415.157 kb on + strand, within MIT1002_00382at 415.204 kb on + strand, within MIT1002_00382at 415.222 kb on - strand, within MIT1002_00382at 415.297 kb on - strand, within MIT1002_00382at 415.323 kb on - strand, within MIT1002_00382at 415.396 kb on + strand, within MIT1002_00382at 415.449 kb on - strand, within MIT1002_00382at 415.486 kb on - strand, within MIT1002_00382at 415.528 kb on + strand, within MIT1002_00382at 415.528 kb on + strand, within MIT1002_00382at 415.574 kb on + strand, within MIT1002_00382at 415.600 kb on + strand, within MIT1002_00382at 415.608 kb on - strand, within MIT1002_00382at 415.694 kb on + strand, within MIT1002_00382at 415.702 kb on - strand, within MIT1002_00382at 415.704 kb on + strand, within MIT1002_00382at 415.705 kb on + strand, within MIT1002_00382at 415.705 kb on + strand, within MIT1002_00382at 415.707 kb on - strand, within MIT1002_00382at 415.713 kb on + strand, within MIT1002_00382at 415.713 kb on + strand, within MIT1002_00382at 415.713 kb on + strand, within MIT1002_00382at 415.718 kb on + strand, within MIT1002_00382at 415.721 kb on - strand, within MIT1002_00382at 415.721 kb on - strand, within MIT1002_00382at 415.721 kb on - strand, within MIT1002_00382at 415.723 kb on + strand, within MIT1002_00382at 415.728 kb on + strand, within MIT1002_00382at 415.728 kb on + strand, within MIT1002_00382at 415.728 kb on + strand, within MIT1002_00382at 415.731 kb on - strand, within MIT1002_00382at 415.736 kb on - strand, within MIT1002_00382at 415.736 kb on - strand, within MIT1002_00382at 415.736 kb on - strand, within MIT1002_00382at 415.807 kb on - strand, within MIT1002_00382at 415.920 kb on - strandat 416.078 kb on - strandat 416.100 kb on - strandat 416.133 kb on + strandat 416.133 kb on + strandat 416.143 kb on + strandat 416.143 kb on + strandat 416.143 kb on - strandat 416.143 kb on - strandat 416.143 kb on - strandat 416.143 kb on - strandat 416.151 kb on - strandat 416.151 kb on - strandat 416.151 kb on - strandat 416.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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412,803 + MIT1002_00380 0.88 -2.9
412,826 + MIT1002_00380 0.89 +0.6
412,834 - MIT1002_00380 0.89 +0.7
412,836 + MIT1002_00380 0.89 +1.0
412,836 + MIT1002_00380 0.89 -0.5
412,850 - MIT1002_00380 0.90 -0.8
412,867 + +0.1
412,867 + +0.5
412,867 + +1.4
412,867 + +0.7
412,875 - +0.2
412,875 - +0.1
412,875 - -0.7
412,875 - +0.3
412,877 + -1.5
412,880 - -1.3
412,909 + -0.3
412,977 - +0.9
413,059 + +0.6
413,150 - +0.4
413,150 - -0.3
413,150 - -0.9
413,150 - -0.8
413,150 - +1.6
413,150 - -1.0
413,274 - MIT1002_00381 0.16 +0.0
413,306 + MIT1002_00381 0.23 +0.4
413,306 + MIT1002_00381 0.23 +0.4
413,321 + MIT1002_00381 0.26 -0.4
413,346 - MIT1002_00381 0.31 -0.4
413,356 - MIT1002_00381 0.33 +0.4
413,411 - MIT1002_00381 0.44 -2.0
413,421 - MIT1002_00381 0.46 -2.2
413,421 - MIT1002_00381 0.46 -0.3
413,649 - -0.2
413,795 + +0.1
413,838 - +1.5
413,849 - -1.7
413,877 - -1.1
413,898 + -0.3
413,963 + -0.2
413,980 + -0.1
413,993 + +1.1
414,176 - MIT1002_00382 0.17 +0.2
414,195 + MIT1002_00382 0.18 +0.4
414,250 + MIT1002_00382 0.20 +1.3
414,252 - MIT1002_00382 0.20 -1.3
414,267 + MIT1002_00382 0.21 -1.1
414,268 + MIT1002_00382 0.21 -2.1
414,268 + MIT1002_00382 0.21 +0.5
414,275 - MIT1002_00382 0.21 +1.4
414,276 - MIT1002_00382 0.21 +0.1
414,276 - MIT1002_00382 0.21 +0.2
414,277 + MIT1002_00382 0.21 -0.1
414,277 + MIT1002_00382 0.21 -1.7
414,285 - MIT1002_00382 0.22 -0.2
414,285 - MIT1002_00382 0.22 +0.0
414,335 + MIT1002_00382 0.24 -0.7
414,368 - MIT1002_00382 0.25 +1.6
414,388 - MIT1002_00382 0.26 +0.2
414,430 + MIT1002_00382 0.28 -0.6
414,430 + MIT1002_00382 0.28 -0.8
414,438 - MIT1002_00382 0.28 -1.2
414,503 + MIT1002_00382 0.31 +0.0
414,511 - MIT1002_00382 0.32 +0.2
414,511 - MIT1002_00382 0.32 -0.7
414,513 + MIT1002_00382 0.32 -1.7
414,527 + MIT1002_00382 0.32 +0.3
414,535 - MIT1002_00382 0.33 -0.2
414,613 + MIT1002_00382 0.36 -0.0
414,626 - MIT1002_00382 0.37 +0.6
414,696 - MIT1002_00382 0.40 +0.1
414,790 + MIT1002_00382 0.44 -0.0
414,795 + MIT1002_00382 0.44 +0.3
414,795 + MIT1002_00382 0.44 -0.4
414,822 - MIT1002_00382 0.45 +0.0
414,836 - MIT1002_00382 0.46 -1.9
414,857 + MIT1002_00382 0.47 -1.9
414,874 + MIT1002_00382 0.48 +0.9
414,885 - MIT1002_00382 0.48 -0.8
414,968 + MIT1002_00382 0.52 -0.3
414,968 + MIT1002_00382 0.52 +0.2
414,970 + MIT1002_00382 0.52 -0.5
415,118 + MIT1002_00382 0.58 +0.2
415,123 + MIT1002_00382 0.59 -1.6
415,157 + MIT1002_00382 0.60 +0.6
415,204 + MIT1002_00382 0.62 +0.0
415,222 - MIT1002_00382 0.63 -0.2
415,297 - MIT1002_00382 0.66 -0.9
415,323 - MIT1002_00382 0.68 +0.3
415,396 + MIT1002_00382 0.71 +0.5
415,449 - MIT1002_00382 0.73 -2.3
415,486 - MIT1002_00382 0.75 -0.7
415,528 + MIT1002_00382 0.77 +1.2
415,528 + MIT1002_00382 0.77 +0.4
415,574 + MIT1002_00382 0.79 -1.6
415,600 + MIT1002_00382 0.80 +0.7
415,608 - MIT1002_00382 0.80 -1.7
415,694 + MIT1002_00382 0.84 +0.8
415,702 - MIT1002_00382 0.84 -0.8
415,704 + MIT1002_00382 0.84 -0.2
415,705 + MIT1002_00382 0.84 -2.3
415,705 + MIT1002_00382 0.84 +0.2
415,707 - MIT1002_00382 0.85 +1.4
415,713 + MIT1002_00382 0.85 -1.7
415,713 + MIT1002_00382 0.85 +1.5
415,713 + MIT1002_00382 0.85 -0.3
415,718 + MIT1002_00382 0.85 -0.5
415,721 - MIT1002_00382 0.85 -1.7
415,721 - MIT1002_00382 0.85 +1.2
415,721 - MIT1002_00382 0.85 +1.4
415,723 + MIT1002_00382 0.85 -0.1
415,728 + MIT1002_00382 0.85 -0.9
415,728 + MIT1002_00382 0.85 -0.3
415,728 + MIT1002_00382 0.85 -0.4
415,731 - MIT1002_00382 0.86 -0.2
415,736 - MIT1002_00382 0.86 -1.5
415,736 - MIT1002_00382 0.86 +0.0
415,736 - MIT1002_00382 0.86 +2.0
415,807 - MIT1002_00382 0.89 +0.2
415,920 - -0.1
416,078 - +0.7
416,100 - +0.8
416,133 + +2.0
416,133 + +1.2
416,143 + +0.0
416,143 + -0.8
416,143 - +1.6
416,143 - -2.5
416,143 - +1.3
416,143 - -1.6
416,151 - +2.1
416,151 - +1.0
416,151 - +1.3
416,151 - +2.3

Or see this region's nucleotide sequence