Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00317

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00315 and MIT1002_00316 are separated by 9 nucleotidesMIT1002_00316 and MIT1002_00317 are separated by 144 nucleotidesMIT1002_00317 and MIT1002_00318 are separated by 432 nucleotides MIT1002_00315: MIT1002_00315 - heat shock protein HtpX, at 342,341 to 343,285 _00315 MIT1002_00316: MIT1002_00316 - Regulatory protein BlaI, at 343,295 to 343,681 _00316 MIT1002_00317: MIT1002_00317 - tyrosine recombinase XerC, at 343,826 to 345,115 _00317 MIT1002_00318: MIT1002_00318 - Transposase, at 345,548 to 346,957 _00318 Position (kb) 343 344 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 342.840 kb on + strand, within MIT1002_00315at 342.841 kb on + strand, within MIT1002_00315at 342.878 kb on - strand, within MIT1002_00315at 342.936 kb on + strand, within MIT1002_00315at 342.937 kb on + strand, within MIT1002_00315at 342.946 kb on - strand, within MIT1002_00315at 342.983 kb on - strand, within MIT1002_00315at 342.983 kb on - strand, within MIT1002_00315at 343.099 kb on + strand, within MIT1002_00315at 343.107 kb on - strand, within MIT1002_00315at 343.128 kb on - strand, within MIT1002_00315at 343.456 kb on + strand, within MIT1002_00316at 343.456 kb on + strand, within MIT1002_00316at 343.465 kb on + strand, within MIT1002_00316at 343.492 kb on + strand, within MIT1002_00316at 343.499 kb on + strand, within MIT1002_00316at 343.500 kb on - strand, within MIT1002_00316at 343.567 kb on - strand, within MIT1002_00316at 343.719 kb on + strandat 343.727 kb on - strandat 343.780 kb on + strandat 343.823 kb on + strandat 343.828 kb on + strandat 343.836 kb on - strandat 343.836 kb on - strandat 343.842 kb on + strandat 343.893 kb on + strandat 343.893 kb on + strandat 343.893 kb on + strandat 343.893 kb on + strandat 343.901 kb on - strandat 343.901 kb on - strandat 343.901 kb on - strandat 343.997 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 343.998 kb on + strand, within MIT1002_00317at 344.003 kb on + strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.006 kb on - strand, within MIT1002_00317at 344.064 kb on - strand, within MIT1002_00317at 344.085 kb on + strand, within MIT1002_00317at 344.095 kb on + strand, within MIT1002_00317at 344.111 kb on - strand, within MIT1002_00317at 344.121 kb on + strand, within MIT1002_00317at 344.121 kb on + strand, within MIT1002_00317at 344.189 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.226 kb on + strand, within MIT1002_00317at 344.227 kb on + strand, within MIT1002_00317at 344.234 kb on - strand, within MIT1002_00317at 344.234 kb on - strand, within MIT1002_00317at 344.234 kb on - strand, within MIT1002_00317at 344.236 kb on + strand, within MIT1002_00317at 344.269 kb on + strand, within MIT1002_00317at 344.271 kb on - strand, within MIT1002_00317at 344.295 kb on - strand, within MIT1002_00317at 344.319 kb on + strand, within MIT1002_00317at 344.404 kb on + strand, within MIT1002_00317at 344.524 kb on + strand, within MIT1002_00317at 344.532 kb on + strand, within MIT1002_00317at 344.532 kb on - strand, within MIT1002_00317at 344.569 kb on - strand, within MIT1002_00317at 344.569 kb on - strand, within MIT1002_00317at 344.634 kb on - strand, within MIT1002_00317at 344.661 kb on - strand, within MIT1002_00317at 344.717 kb on - strand, within MIT1002_00317at 344.812 kb on + strand, within MIT1002_00317at 344.820 kb on - strand, within MIT1002_00317at 344.820 kb on - strand, within MIT1002_00317at 344.820 kb on - strand, within MIT1002_00317at 344.820 kb on - strand, within MIT1002_00317at 344.906 kb on - strand, within MIT1002_00317at 344.968 kb on - strand, within MIT1002_00317at 344.968 kb on - strand, within MIT1002_00317at 344.968 kb on - strand, within MIT1002_00317at 344.974 kb on - strand, within MIT1002_00317at 345.059 kb on - strandat 345.061 kb on - strandat 345.066 kb on + strandat 345.069 kb on - strandat 345.069 kb on - strandat 345.069 kb on - strandat 345.076 kb on + strandat 345.084 kb on - strandat 345.345 kb on + strandat 345.345 kb on + strandat 345.345 kb on + strandat 345.345 kb on + strandat 345.347 kb on + strandat 345.424 kb on + strandat 345.460 kb on - strandat 345.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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342,840 + MIT1002_00315 0.53 -0.5
342,841 + MIT1002_00315 0.53 +0.7
342,878 - MIT1002_00315 0.57 -2.3
342,936 + MIT1002_00315 0.63 -0.1
342,937 + MIT1002_00315 0.63 -0.4
342,946 - MIT1002_00315 0.64 -0.2
342,983 - MIT1002_00315 0.68 +0.7
342,983 - MIT1002_00315 0.68 +0.2
343,099 + MIT1002_00315 0.80 +0.5
343,107 - MIT1002_00315 0.81 +0.9
343,128 - MIT1002_00315 0.83 +1.3
343,456 + MIT1002_00316 0.42 -1.3
343,456 + MIT1002_00316 0.42 -1.8
343,465 + MIT1002_00316 0.44 +0.9
343,492 + MIT1002_00316 0.51 -0.2
343,499 + MIT1002_00316 0.53 +0.8
343,500 - MIT1002_00316 0.53 -0.0
343,567 - MIT1002_00316 0.70 +1.3
343,719 + +1.2
343,727 - -0.2
343,780 + +1.9
343,823 + -0.6
343,828 + -0.3
343,836 - -0.3
343,836 - +1.3
343,842 + -1.4
343,893 + +0.9
343,893 + -0.0
343,893 + -0.0
343,893 + +0.9
343,901 - -0.5
343,901 - +0.8
343,901 - +1.7
343,997 + MIT1002_00317 0.13 +1.0
343,998 + MIT1002_00317 0.13 -0.2
343,998 + MIT1002_00317 0.13 -1.9
343,998 + MIT1002_00317 0.13 +0.3
343,998 + MIT1002_00317 0.13 +1.4
343,998 + MIT1002_00317 0.13 +0.7
343,998 + MIT1002_00317 0.13 -0.2
344,003 + MIT1002_00317 0.14 -0.7
344,006 - MIT1002_00317 0.14 -0.1
344,006 - MIT1002_00317 0.14 +0.2
344,006 - MIT1002_00317 0.14 -0.1
344,006 - MIT1002_00317 0.14 -0.1
344,006 - MIT1002_00317 0.14 -0.5
344,006 - MIT1002_00317 0.14 +2.1
344,006 - MIT1002_00317 0.14 -1.7
344,006 - MIT1002_00317 0.14 -0.7
344,006 - MIT1002_00317 0.14 -0.0
344,064 - MIT1002_00317 0.18 -3.0
344,085 + MIT1002_00317 0.20 +1.2
344,095 + MIT1002_00317 0.21 -0.2
344,111 - MIT1002_00317 0.22 -0.8
344,121 + MIT1002_00317 0.23 -0.1
344,121 + MIT1002_00317 0.23 +0.6
344,189 + MIT1002_00317 0.28 +0.1
344,226 + MIT1002_00317 0.31 +0.6
344,226 + MIT1002_00317 0.31 +0.2
344,226 + MIT1002_00317 0.31 -0.1
344,226 + MIT1002_00317 0.31 -0.8
344,226 + MIT1002_00317 0.31 -0.8
344,226 + MIT1002_00317 0.31 -1.3
344,226 + MIT1002_00317 0.31 +0.1
344,226 + MIT1002_00317 0.31 +1.1
344,226 + MIT1002_00317 0.31 +0.3
344,227 + MIT1002_00317 0.31 -1.2
344,234 - MIT1002_00317 0.32 -0.4
344,234 - MIT1002_00317 0.32 -0.8
344,234 - MIT1002_00317 0.32 -0.1
344,236 + MIT1002_00317 0.32 +0.8
344,269 + MIT1002_00317 0.34 -1.4
344,271 - MIT1002_00317 0.34 +0.1
344,295 - MIT1002_00317 0.36 +0.2
344,319 + MIT1002_00317 0.38 +0.1
344,404 + MIT1002_00317 0.45 -0.5
344,524 + MIT1002_00317 0.54 -2.2
344,532 + MIT1002_00317 0.55 -1.4
344,532 - MIT1002_00317 0.55 -1.3
344,569 - MIT1002_00317 0.58 +0.8
344,569 - MIT1002_00317 0.58 +1.1
344,634 - MIT1002_00317 0.63 +3.1
344,661 - MIT1002_00317 0.65 -2.0
344,717 - MIT1002_00317 0.69 +1.2
344,812 + MIT1002_00317 0.76 -0.2
344,820 - MIT1002_00317 0.77 +0.2
344,820 - MIT1002_00317 0.77 +0.5
344,820 - MIT1002_00317 0.77 +1.1
344,820 - MIT1002_00317 0.77 -0.1
344,906 - MIT1002_00317 0.84 +0.4
344,968 - MIT1002_00317 0.89 -1.7
344,968 - MIT1002_00317 0.89 -0.4
344,968 - MIT1002_00317 0.89 -0.1
344,974 - MIT1002_00317 0.89 -0.9
345,059 - +1.2
345,061 - +0.8
345,066 + -0.4
345,069 - +0.7
345,069 - -0.0
345,069 - -2.3
345,076 + +0.5
345,084 - +0.3
345,345 + -0.2
345,345 + -1.5
345,345 + +0.8
345,345 + -1.1
345,347 + -0.1
345,424 + -0.1
345,460 - -1.5
345,472 - +0.1

Or see this region's nucleotide sequence