Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00272 and MIT1002_00273 overlap by 4 nucleotides MIT1002_00273 and MIT1002_00274 are separated by 1 nucleotides MIT1002_00274 and MIT1002_00275 are separated by 17 nucleotides
MIT1002_00272: MIT1002_00272 - Hydrogenase 2 maturation protease, at 298,358 to 298,912
_00272
MIT1002_00273: MIT1002_00273 - hypothetical protein, at 298,909 to 299,343
_00273
MIT1002_00274: MIT1002_00274 - Uptake hydrogenase small subunit precursor, at 299,345 to 300,343
_00274
MIT1002_00275: MIT1002_00275 - Hydrogenase-1 large chain, at 300,361 to 302,238
_00275
Position (kb) 299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 298.347 kb on + strand at 298.445 kb on - strand, within MIT1002_00272 at 298.484 kb on + strand, within MIT1002_00272 at 298.492 kb on - strand, within MIT1002_00272 at 298.503 kb on - strand, within MIT1002_00272 at 298.528 kb on + strand, within MIT1002_00272 at 298.550 kb on + strand, within MIT1002_00272 at 298.569 kb on - strand, within MIT1002_00272 at 298.606 kb on - strand, within MIT1002_00272 at 298.676 kb on + strand, within MIT1002_00272 at 298.734 kb on + strand, within MIT1002_00272 at 298.818 kb on - strand, within MIT1002_00272 at 298.869 kb on + strand at 298.901 kb on - strand at 298.969 kb on + strand, within MIT1002_00273 at 298.998 kb on - strand, within MIT1002_00273 at 299.098 kb on - strand, within MIT1002_00273 at 299.100 kb on + strand, within MIT1002_00273 at 299.108 kb on - strand, within MIT1002_00273 at 299.108 kb on - strand, within MIT1002_00273 at 299.124 kb on + strand, within MIT1002_00273 at 299.126 kb on + strand, within MIT1002_00273 at 299.161 kb on - strand, within MIT1002_00273 at 299.225 kb on - strand, within MIT1002_00273 at 299.236 kb on - strand, within MIT1002_00273 at 299.262 kb on - strand, within MIT1002_00273 at 299.276 kb on + strand, within MIT1002_00273 at 299.282 kb on - strand, within MIT1002_00273 at 299.329 kb on + strand at 299.329 kb on + strand at 299.482 kb on - strand, within MIT1002_00274 at 299.521 kb on + strand, within MIT1002_00274 at 299.531 kb on + strand, within MIT1002_00274 at 299.531 kb on + strand, within MIT1002_00274 at 299.531 kb on + strand, within MIT1002_00274 at 299.534 kb on - strand, within MIT1002_00274 at 299.554 kb on - strand, within MIT1002_00274 at 299.564 kb on - strand, within MIT1002_00274 at 299.658 kb on - strand, within MIT1002_00274 at 299.658 kb on - strand, within MIT1002_00274 at 299.724 kb on + strand, within MIT1002_00274 at 299.724 kb on + strand, within MIT1002_00274 at 299.727 kb on - strand, within MIT1002_00274 at 299.741 kb on - strand, within MIT1002_00274 at 299.809 kb on + strand, within MIT1002_00274 at 299.844 kb on - strand, within MIT1002_00274 at 299.917 kb on - strand, within MIT1002_00274 at 299.927 kb on - strand, within MIT1002_00274 at 300.034 kb on + strand, within MIT1002_00274 at 300.065 kb on - strand, within MIT1002_00274 at 300.198 kb on - strand, within MIT1002_00274 at 300.269 kb on + strand at 300.269 kb on + strand at 300.284 kb on - strand at 300.295 kb on + strand at 300.312 kb on - strand at 300.436 kb on + strand at 300.453 kb on - strand at 300.481 kb on - strand at 300.515 kb on + strand at 300.523 kb on - strand at 300.523 kb on - strand at 300.523 kb on - strand at 300.573 kb on + strand, within MIT1002_00275 at 300.573 kb on + strand, within MIT1002_00275 at 300.581 kb on + strand, within MIT1002_00275 at 300.609 kb on - strand, within MIT1002_00275 at 300.622 kb on + strand, within MIT1002_00275 at 300.664 kb on + strand, within MIT1002_00275 at 300.765 kb on - strand, within MIT1002_00275 at 300.776 kb on + strand, within MIT1002_00275 at 300.784 kb on - strand, within MIT1002_00275 at 300.817 kb on + strand, within MIT1002_00275 at 300.862 kb on - strand, within MIT1002_00275 at 300.897 kb on + strand, within MIT1002_00275 at 300.905 kb on + strand, within MIT1002_00275 at 300.990 kb on + strand, within MIT1002_00275 at 300.995 kb on + strand, within MIT1002_00275 at 300.995 kb on + strand, within MIT1002_00275 at 301.040 kb on - strand, within MIT1002_00275 at 301.088 kb on + strand, within MIT1002_00275 at 301.096 kb on - strand, within MIT1002_00275 at 301.109 kb on - strand, within MIT1002_00275 at 301.168 kb on + strand, within MIT1002_00275 at 301.216 kb on + strand, within MIT1002_00275 at 301.232 kb on - strand, within MIT1002_00275 at 301.292 kb on - strand, within MIT1002_00275 at 301.324 kb on + strand, within MIT1002_00275 at 301.340 kb on + strand, within MIT1002_00275 at 301.340 kb on + strand, within MIT1002_00275 at 301.340 kb on + strand, within MIT1002_00275
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 298,347 + +1.8 298,445 - MIT1002_00272 0.16 -1.2 298,484 + MIT1002_00272 0.23 -0.7 298,492 - MIT1002_00272 0.24 -0.1 298,503 - MIT1002_00272 0.26 +0.5 298,528 + MIT1002_00272 0.31 -0.4 298,550 + MIT1002_00272 0.35 -0.6 298,569 - MIT1002_00272 0.38 +2.0 298,606 - MIT1002_00272 0.45 -0.7 298,676 + MIT1002_00272 0.57 +1.0 298,734 + MIT1002_00272 0.68 +0.8 298,818 - MIT1002_00272 0.83 +1.5 298,869 + +1.5 298,901 - +1.5 298,969 + MIT1002_00273 0.14 -0.5 298,998 - MIT1002_00273 0.20 -0.1 299,098 - MIT1002_00273 0.43 -1.8 299,100 + MIT1002_00273 0.44 -0.2 299,108 - MIT1002_00273 0.46 +1.5 299,108 - MIT1002_00273 0.46 -0.2 299,124 + MIT1002_00273 0.49 +1.4 299,126 + MIT1002_00273 0.50 -0.3 299,161 - MIT1002_00273 0.58 +0.2 299,225 - MIT1002_00273 0.73 -0.3 299,236 - MIT1002_00273 0.75 +1.9 299,262 - MIT1002_00273 0.81 -0.1 299,276 + MIT1002_00273 0.84 -0.4 299,282 - MIT1002_00273 0.86 -0.9 299,329 + +1.0 299,329 + +1.4 299,482 - MIT1002_00274 0.14 -1.7 299,521 + MIT1002_00274 0.18 -0.5 299,531 + MIT1002_00274 0.19 +0.0 299,531 + MIT1002_00274 0.19 -0.5 299,531 + MIT1002_00274 0.19 +0.1 299,534 - MIT1002_00274 0.19 -0.9 299,554 - MIT1002_00274 0.21 +0.7 299,564 - MIT1002_00274 0.22 -1.3 299,658 - MIT1002_00274 0.31 +0.7 299,658 - MIT1002_00274 0.31 -0.2 299,724 + MIT1002_00274 0.38 +0.0 299,724 + MIT1002_00274 0.38 -0.1 299,727 - MIT1002_00274 0.38 -1.1 299,741 - MIT1002_00274 0.40 -1.2 299,809 + MIT1002_00274 0.46 -0.9 299,844 - MIT1002_00274 0.50 -0.4 299,917 - MIT1002_00274 0.57 -0.4 299,927 - MIT1002_00274 0.58 -3.7 300,034 + MIT1002_00274 0.69 +1.0 300,065 - MIT1002_00274 0.72 -0.7 300,198 - MIT1002_00274 0.85 -1.1 300,269 + -0.3 300,269 + +1.6 300,284 - -0.1 300,295 + +0.1 300,312 - +1.0 300,436 + +0.4 300,453 - +2.1 300,481 - -1.2 300,515 + +1.6 300,523 - -0.9 300,523 - +0.1 300,523 - +0.1 300,573 + MIT1002_00275 0.11 +0.3 300,573 + MIT1002_00275 0.11 -0.7 300,581 + MIT1002_00275 0.12 -0.1 300,609 - MIT1002_00275 0.13 -0.1 300,622 + MIT1002_00275 0.14 +2.0 300,664 + MIT1002_00275 0.16 +3.2 300,765 - MIT1002_00275 0.22 -1.2 300,776 + MIT1002_00275 0.22 -1.1 300,784 - MIT1002_00275 0.23 +0.7 300,817 + MIT1002_00275 0.24 -0.3 300,862 - MIT1002_00275 0.27 +0.2 300,897 + MIT1002_00275 0.29 +0.1 300,905 + MIT1002_00275 0.29 +1.6 300,990 + MIT1002_00275 0.33 +1.0 300,995 + MIT1002_00275 0.34 -2.7 300,995 + MIT1002_00275 0.34 -0.3 301,040 - MIT1002_00275 0.36 -0.6 301,088 + MIT1002_00275 0.39 +0.2 301,096 - MIT1002_00275 0.39 +1.5 301,109 - MIT1002_00275 0.40 -0.2 301,168 + MIT1002_00275 0.43 +0.1 301,216 + MIT1002_00275 0.46 +0.3 301,232 - MIT1002_00275 0.46 -0.4 301,292 - MIT1002_00275 0.50 -1.7 301,324 + MIT1002_00275 0.51 +0.6 301,340 + MIT1002_00275 0.52 +1.1 301,340 + MIT1002_00275 0.52 -1.3 301,340 + MIT1002_00275 0.52 -1.2
Or see this region's nucleotide sequence