Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00252 and MIT1002_00253 overlap by 1 nucleotides MIT1002_00253 and MIT1002_00254 are separated by 66 nucleotides MIT1002_00254 and MIT1002_00255 are separated by 8 nucleotides MIT1002_00255 and MIT1002_00256 are separated by 11 nucleotides
MIT1002_00252: MIT1002_00252 - Cation efflux system protein CusA, at 280,553 to 283,690
_00252
MIT1002_00253: MIT1002_00253 - hypothetical protein, at 283,690 to 283,881
_00253
MIT1002_00254: MIT1002_00254 - Copper resistance protein CopC, at 283,948 to 284,340
_00254
MIT1002_00255: MIT1002_00255 - Putative copper export protein, at 284,349 to 285,263
_00255
MIT1002_00256: MIT1002_00256 - hypothetical protein, at 285,275 to 285,754
_00256
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 283.000 kb on + strand, within MIT1002_00252 at 283.027 kb on - strand, within MIT1002_00252 at 283.035 kb on + strand, within MIT1002_00252 at 283.109 kb on + strand, within MIT1002_00252 at 283.155 kb on - strand, within MIT1002_00252 at 283.155 kb on - strand, within MIT1002_00252 at 283.279 kb on - strand, within MIT1002_00252 at 283.315 kb on + strand, within MIT1002_00252 at 283.404 kb on + strand at 283.413 kb on - strand at 283.446 kb on - strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.449 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.454 kb on + strand at 283.457 kb on - strand at 283.457 kb on - strand at 283.457 kb on - strand at 283.457 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.462 kb on - strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.464 kb on + strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.472 kb on - strand at 283.559 kb on + strand at 283.559 kb on - strand at 283.621 kb on + strand at 283.840 kb on + strand, within MIT1002_00253 at 283.849 kb on + strand, within MIT1002_00253 at 283.925 kb on + strand at 283.950 kb on - strand at 283.987 kb on - strand at 284.034 kb on - strand, within MIT1002_00254 at 284.034 kb on - strand, within MIT1002_00254 at 284.039 kb on - strand, within MIT1002_00254 at 284.110 kb on - strand, within MIT1002_00254 at 284.216 kb on - strand, within MIT1002_00254 at 284.231 kb on + strand, within MIT1002_00254 at 284.236 kb on + strand, within MIT1002_00254 at 284.319 kb on - strand at 284.321 kb on - strand at 284.355 kb on - strand at 284.367 kb on + strand at 284.399 kb on - strand at 284.414 kb on + strand at 284.429 kb on + strand at 284.670 kb on - strand, within MIT1002_00255 at 284.680 kb on - strand, within MIT1002_00255 at 284.687 kb on + strand, within MIT1002_00255 at 284.695 kb on - strand, within MIT1002_00255 at 284.811 kb on + strand, within MIT1002_00255 at 284.836 kb on + strand, within MIT1002_00255 at 284.870 kb on + strand, within MIT1002_00255 at 284.873 kb on - strand, within MIT1002_00255 at 284.885 kb on + strand, within MIT1002_00255 at 284.888 kb on - strand, within MIT1002_00255 at 284.903 kb on + strand, within MIT1002_00255 at 285.059 kb on - strand, within MIT1002_00255 at 285.059 kb on - strand, within MIT1002_00255 at 285.135 kb on + strand, within MIT1002_00255 at 285.150 kb on + strand, within MIT1002_00255 at 285.231 kb on + strand at 285.239 kb on - strand at 285.241 kb on - strand at 285.246 kb on - strand at 285.330 kb on + strand, within MIT1002_00256
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 283,000 + MIT1002_00252 0.78 -0.2 283,027 - MIT1002_00252 0.79 -0.4 283,035 + MIT1002_00252 0.79 -1.5 283,109 + MIT1002_00252 0.81 -1.0 283,155 - MIT1002_00252 0.83 +1.4 283,155 - MIT1002_00252 0.83 -2.2 283,279 - MIT1002_00252 0.87 -2.0 283,315 + MIT1002_00252 0.88 -0.9 283,404 + -2.6 283,413 - -0.8 283,446 - -0.1 283,449 + +0.8 283,449 + -0.5 283,449 + -0.9 283,449 + +0.9 283,449 + -0.2 283,449 + +0.2 283,449 + -0.9 283,449 + -0.1 283,454 + -0.6 283,454 + -0.2 283,454 + -2.5 283,454 + +0.7 283,454 + -2.1 283,454 + +0.9 283,454 + +0.9 283,454 + +0.3 283,457 - -0.5 283,457 - +0.9 283,457 - -0.9 283,457 - +0.2 283,462 - -0.5 283,462 - -0.6 283,462 - -0.7 283,462 - -1.8 283,462 - -0.5 283,462 - -2.0 283,462 - -0.6 283,462 - -1.0 283,464 + +2.6 283,464 + -0.9 283,464 + +1.6 283,464 + +0.8 283,464 + -0.5 283,464 + +0.2 283,464 + -0.6 283,464 + -1.8 283,464 + -0.1 283,464 + +1.0 283,464 + -1.2 283,464 + +1.0 283,464 + -0.7 283,472 - -0.5 283,472 - +1.4 283,472 - +0.9 283,472 - +0.8 283,472 - +0.4 283,472 - +2.1 283,472 - -1.3 283,472 - -0.8 283,472 - -0.7 283,472 - +0.3 283,472 - -0.7 283,472 - -0.9 283,559 + -0.1 283,559 - -0.2 283,621 + -1.5 283,840 + MIT1002_00253 0.78 +0.0 283,849 + MIT1002_00253 0.83 +0.2 283,925 + +0.2 283,950 - +3.1 283,987 - +0.1 284,034 - MIT1002_00254 0.22 -0.5 284,034 - MIT1002_00254 0.22 -0.1 284,039 - MIT1002_00254 0.23 -1.7 284,110 - MIT1002_00254 0.41 +0.1 284,216 - MIT1002_00254 0.68 +0.9 284,231 + MIT1002_00254 0.72 -0.6 284,236 + MIT1002_00254 0.73 -0.0 284,319 - -1.6 284,321 - +0.5 284,355 - +1.9 284,367 + -1.3 284,399 - +1.3 284,414 + -0.4 284,429 + +1.1 284,670 - MIT1002_00255 0.35 +0.1 284,680 - MIT1002_00255 0.36 +1.0 284,687 + MIT1002_00255 0.37 -0.2 284,695 - MIT1002_00255 0.38 -0.1 284,811 + MIT1002_00255 0.50 -0.6 284,836 + MIT1002_00255 0.53 +1.5 284,870 + MIT1002_00255 0.57 -0.9 284,873 - MIT1002_00255 0.57 -1.2 284,885 + MIT1002_00255 0.59 +1.2 284,888 - MIT1002_00255 0.59 -1.1 284,903 + MIT1002_00255 0.61 +0.6 285,059 - MIT1002_00255 0.78 +0.5 285,059 - MIT1002_00255 0.78 +1.1 285,135 + MIT1002_00255 0.86 +2.6 285,150 + MIT1002_00255 0.88 +1.1 285,231 + -0.2 285,239 - -0.2 285,241 - +2.3 285,246 - -0.6 285,330 + MIT1002_00256 0.11 +1.1
Or see this region's nucleotide sequence