Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00138

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00137 and MIT1002_00138 overlap by 4 nucleotidesMIT1002_00138 and MIT1002_00139 are separated by 95 nucleotidesMIT1002_00139 and MIT1002_00140 are separated by 122 nucleotides MIT1002_00137: MIT1002_00137 - Propionyl-CoA:succinate CoA transferase, at 148,262 to 150,103 _00137 MIT1002_00138: MIT1002_00138 - Histone deacetylase-like amidohydrolase, at 150,100 to 151,080 _00138 MIT1002_00139: MIT1002_00139 - glutaredoxin 3, at 151,176 to 151,916 _00139 MIT1002_00140: MIT1002_00140 - hypothetical protein, at 152,039 to 152,530 _00140 Position (kb) 150 151 152Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 149.170 kb on + strand, within MIT1002_00137at 149.178 kb on - strand, within MIT1002_00137at 149.178 kb on - strand, within MIT1002_00137at 149.206 kb on + strand, within MIT1002_00137at 149.243 kb on + strand, within MIT1002_00137at 149.314 kb on + strand, within MIT1002_00137at 149.314 kb on + strand, within MIT1002_00137at 149.322 kb on - strand, within MIT1002_00137at 149.377 kb on - strand, within MIT1002_00137at 149.392 kb on + strand, within MIT1002_00137at 149.399 kb on + strand, within MIT1002_00137at 149.399 kb on + strand, within MIT1002_00137at 149.399 kb on + strand, within MIT1002_00137at 149.448 kb on + strand, within MIT1002_00137at 149.478 kb on + strand, within MIT1002_00137at 149.486 kb on - strand, within MIT1002_00137at 149.516 kb on + strand, within MIT1002_00137at 149.525 kb on - strand, within MIT1002_00137at 149.571 kb on + strand, within MIT1002_00137at 149.571 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.697 kb on + strand, within MIT1002_00137at 149.705 kb on - strand, within MIT1002_00137at 149.705 kb on - strand, within MIT1002_00137at 149.724 kb on - strand, within MIT1002_00137at 149.791 kb on + strand, within MIT1002_00137at 149.794 kb on - strand, within MIT1002_00137at 149.796 kb on - strand, within MIT1002_00137at 149.871 kb on + strand, within MIT1002_00137at 149.914 kb on - strand, within MIT1002_00137at 149.981 kb on + strandat 149.982 kb on - strandat 150.001 kb on - strandat 150.136 kb on + strandat 150.139 kb on - strandat 150.156 kb on - strandat 150.160 kb on + strandat 150.219 kb on - strand, within MIT1002_00138at 150.234 kb on + strand, within MIT1002_00138at 150.242 kb on - strand, within MIT1002_00138at 150.266 kb on - strand, within MIT1002_00138at 150.301 kb on + strand, within MIT1002_00138at 150.309 kb on - strand, within MIT1002_00138at 150.422 kb on - strand, within MIT1002_00138at 150.447 kb on - strand, within MIT1002_00138at 150.447 kb on - strand, within MIT1002_00138at 150.477 kb on - strand, within MIT1002_00138at 150.521 kb on + strand, within MIT1002_00138at 150.526 kb on + strand, within MIT1002_00138at 150.526 kb on + strand, within MIT1002_00138at 150.526 kb on + strand, within MIT1002_00138at 150.526 kb on + strand, within MIT1002_00138at 150.531 kb on - strand, within MIT1002_00138at 150.534 kb on - strand, within MIT1002_00138at 150.546 kb on - strand, within MIT1002_00138at 150.634 kb on + strand, within MIT1002_00138at 150.706 kb on - strand, within MIT1002_00138at 150.721 kb on + strand, within MIT1002_00138at 150.745 kb on + strand, within MIT1002_00138at 150.785 kb on - strand, within MIT1002_00138at 150.785 kb on - strand, within MIT1002_00138at 150.792 kb on - strand, within MIT1002_00138at 150.805 kb on + strand, within MIT1002_00138at 150.823 kb on - strand, within MIT1002_00138at 150.824 kb on - strand, within MIT1002_00138at 150.937 kb on - strand, within MIT1002_00138at 150.943 kb on - strand, within MIT1002_00138at 150.963 kb on - strand, within MIT1002_00138at 150.963 kb on - strand, within MIT1002_00138at 150.974 kb on + strand, within MIT1002_00138at 151.023 kb on - strandat 151.033 kb on + strandat 151.033 kb on + strandat 151.048 kb on + strandat 151.048 kb on + strandat 151.048 kb on + strandat 151.048 kb on + strandat 151.049 kb on - strandat 151.049 kb on - strandat 151.049 kb on - strandat 151.056 kb on - strandat 151.072 kb on + strandat 151.096 kb on + strandat 151.121 kb on + strandat 151.131 kb on + strandat 151.131 kb on + strandat 151.144 kb on + strandat 151.144 kb on + strandat 151.152 kb on - strandat 151.163 kb on - strandat 151.205 kb on + strandat 151.213 kb on - strandat 151.249 kb on - strandat 151.267 kb on - strand, within MIT1002_00139at 151.368 kb on + strand, within MIT1002_00139at 151.484 kb on + strand, within MIT1002_00139at 151.496 kb on + strand, within MIT1002_00139at 151.498 kb on + strand, within MIT1002_00139at 151.565 kb on + strand, within MIT1002_00139at 151.573 kb on - strand, within MIT1002_00139at 151.618 kb on - strand, within MIT1002_00139at 151.646 kb on + strand, within MIT1002_00139at 151.672 kb on - strand, within MIT1002_00139at 151.738 kb on - strand, within MIT1002_00139at 151.817 kb on - strand, within MIT1002_00139at 151.817 kb on - strand, within MIT1002_00139at 151.819 kb on - strand, within MIT1002_00139at 151.874 kb on + strandat 151.874 kb on + strandat 151.877 kb on - strandat 151.893 kb on + strandat 151.903 kb on - strandat 151.906 kb on + strandat 151.927 kb on + strandat 152.035 kb on + strandat 152.043 kb on - strandat 152.043 kb on - strandat 152.043 kb on - strandat 152.064 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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149,170 + MIT1002_00137 0.49 -0.2
149,178 - MIT1002_00137 0.50 -0.5
149,178 - MIT1002_00137 0.50 +0.7
149,206 + MIT1002_00137 0.51 -0.2
149,243 + MIT1002_00137 0.53 -0.4
149,314 + MIT1002_00137 0.57 +0.2
149,314 + MIT1002_00137 0.57 -0.6
149,322 - MIT1002_00137 0.58 +0.3
149,377 - MIT1002_00137 0.61 +0.9
149,392 + MIT1002_00137 0.61 +1.2
149,399 + MIT1002_00137 0.62 -1.8
149,399 + MIT1002_00137 0.62 +0.6
149,399 + MIT1002_00137 0.62 +0.2
149,448 + MIT1002_00137 0.64 -1.5
149,478 + MIT1002_00137 0.66 -0.4
149,486 - MIT1002_00137 0.66 +1.9
149,516 + MIT1002_00137 0.68 +3.2
149,525 - MIT1002_00137 0.69 +0.6
149,571 + MIT1002_00137 0.71 +1.5
149,571 + MIT1002_00137 0.71 +0.0
149,697 + MIT1002_00137 0.78 +1.0
149,697 + MIT1002_00137 0.78 -0.6
149,697 + MIT1002_00137 0.78 +0.3
149,697 + MIT1002_00137 0.78 -0.3
149,697 + MIT1002_00137 0.78 +1.5
149,705 - MIT1002_00137 0.78 +0.6
149,705 - MIT1002_00137 0.78 +0.5
149,724 - MIT1002_00137 0.79 +1.4
149,791 + MIT1002_00137 0.83 -1.1
149,794 - MIT1002_00137 0.83 -0.5
149,796 - MIT1002_00137 0.83 -1.8
149,871 + MIT1002_00137 0.87 +0.9
149,914 - MIT1002_00137 0.90 +1.4
149,981 + -2.2
149,982 - -1.6
150,001 - +0.1
150,136 + -1.4
150,139 - -4.2
150,156 - -1.2
150,160 + +0.1
150,219 - MIT1002_00138 0.12 -2.3
150,234 + MIT1002_00138 0.14 -0.6
150,242 - MIT1002_00138 0.14 -3.4
150,266 - MIT1002_00138 0.17 -2.4
150,301 + MIT1002_00138 0.20 -3.0
150,309 - MIT1002_00138 0.21 -0.6
150,422 - MIT1002_00138 0.33 -0.4
150,447 - MIT1002_00138 0.35 -2.2
150,447 - MIT1002_00138 0.35 -1.1
150,477 - MIT1002_00138 0.38 -3.2
150,521 + MIT1002_00138 0.43 -1.4
150,526 + MIT1002_00138 0.43 -2.7
150,526 + MIT1002_00138 0.43 +0.5
150,526 + MIT1002_00138 0.43 -0.5
150,526 + MIT1002_00138 0.43 -4.0
150,531 - MIT1002_00138 0.44 +0.9
150,534 - MIT1002_00138 0.44 -2.3
150,546 - MIT1002_00138 0.45 -3.8
150,634 + MIT1002_00138 0.54 -2.7
150,706 - MIT1002_00138 0.62 -0.1
150,721 + MIT1002_00138 0.63 -0.7
150,745 + MIT1002_00138 0.66 -0.7
150,785 - MIT1002_00138 0.70 -0.8
150,785 - MIT1002_00138 0.70 -2.6
150,792 - MIT1002_00138 0.71 -4.0
150,805 + MIT1002_00138 0.72 -2.5
150,823 - MIT1002_00138 0.74 -0.8
150,824 - MIT1002_00138 0.74 -2.5
150,937 - MIT1002_00138 0.85 -1.9
150,943 - MIT1002_00138 0.86 -1.1
150,963 - MIT1002_00138 0.88 +0.4
150,963 - MIT1002_00138 0.88 -4.7
150,974 + MIT1002_00138 0.89 -1.5
151,023 - +0.4
151,033 + -0.7
151,033 + -2.8
151,048 + -1.4
151,048 + -0.4
151,048 + -0.1
151,048 + +0.7
151,049 - -0.6
151,049 - -2.5
151,049 - -2.6
151,056 - +0.4
151,072 + -2.2
151,096 + +0.8
151,121 + -1.7
151,131 + +1.4
151,131 + -2.5
151,144 + +1.5
151,144 + -0.9
151,152 - -0.4
151,163 - +1.6
151,205 + -0.1
151,213 - -0.2
151,249 - +1.4
151,267 - MIT1002_00139 0.12 +1.5
151,368 + MIT1002_00139 0.26 +0.7
151,484 + MIT1002_00139 0.42 -1.8
151,496 + MIT1002_00139 0.43 -2.0
151,498 + MIT1002_00139 0.43 -1.4
151,565 + MIT1002_00139 0.52 -1.4
151,573 - MIT1002_00139 0.54 -2.1
151,618 - MIT1002_00139 0.60 -1.0
151,646 + MIT1002_00139 0.63 +0.1
151,672 - MIT1002_00139 0.67 +0.4
151,738 - MIT1002_00139 0.76 -1.2
151,817 - MIT1002_00139 0.87 +0.1
151,817 - MIT1002_00139 0.87 -1.0
151,819 - MIT1002_00139 0.87 -2.0
151,874 + -0.3
151,874 + +0.6
151,877 - +0.2
151,893 + -0.6
151,903 - -1.9
151,906 + +1.2
151,927 + +1.2
152,035 + +1.6
152,043 - -0.1
152,043 - +0.2
152,043 - -0.2
152,064 + -0.7

Or see this region's nucleotide sequence