Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00078 and MIT1002_00079 are separated by 139 nucleotides MIT1002_00079 and MIT1002_00080 are separated by 135 nucleotides MIT1002_00080 and MIT1002_00081 are separated by 330 nucleotides
MIT1002_00078: MIT1002_00078 - Glycine betaine transporter OpuD, at 83,715 to 85,484
_00078
MIT1002_00079: MIT1002_00079 - hypothetical protein, at 85,624 to 86,253
_00079
MIT1002_00080: MIT1002_00080 - hypothetical protein, at 86,389 to 86,637
_00080
MIT1002_00081: MIT1002_00081 - HNH endonuclease, at 86,968 to 87,387
_00081
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1 at 84.627 kb on + strand, within MIT1002_00078 at 84.639 kb on + strand, within MIT1002_00078 at 84.670 kb on + strand, within MIT1002_00078 at 84.678 kb on - strand, within MIT1002_00078 at 84.678 kb on - strand, within MIT1002_00078 at 84.732 kb on + strand, within MIT1002_00078 at 84.732 kb on + strand, within MIT1002_00078 at 84.750 kb on - strand, within MIT1002_00078 at 84.756 kb on + strand, within MIT1002_00078 at 84.801 kb on - strand, within MIT1002_00078 at 84.801 kb on - strand, within MIT1002_00078 at 84.910 kb on - strand, within MIT1002_00078 at 84.914 kb on + strand, within MIT1002_00078 at 85.002 kb on - strand, within MIT1002_00078 at 85.023 kb on + strand, within MIT1002_00078 at 85.031 kb on - strand, within MIT1002_00078 at 85.201 kb on + strand, within MIT1002_00078 at 85.201 kb on + strand, within MIT1002_00078 at 85.233 kb on + strand, within MIT1002_00078 at 85.233 kb on + strand, within MIT1002_00078 at 85.259 kb on - strand, within MIT1002_00078 at 85.279 kb on + strand, within MIT1002_00078 at 85.290 kb on + strand, within MIT1002_00078 at 85.350 kb on + strand at 85.360 kb on + strand at 85.388 kb on + strand at 85.418 kb on + strand at 85.463 kb on + strand at 85.463 kb on + strand at 85.463 kb on - strand at 85.471 kb on - strand at 85.582 kb on + strand at 85.679 kb on - strand at 85.912 kb on - strand, within MIT1002_00079 at 85.913 kb on + strand, within MIT1002_00079 at 85.987 kb on + strand, within MIT1002_00079 at 85.997 kb on + strand, within MIT1002_00079 at 85.997 kb on + strand, within MIT1002_00079 at 86.051 kb on + strand, within MIT1002_00079 at 86.051 kb on + strand, within MIT1002_00079 at 86.106 kb on + strand, within MIT1002_00079 at 86.114 kb on - strand, within MIT1002_00079 at 86.120 kb on + strand, within MIT1002_00079 at 86.125 kb on + strand, within MIT1002_00079 at 86.131 kb on + strand, within MIT1002_00079 at 86.131 kb on + strand, within MIT1002_00079 at 86.131 kb on + strand, within MIT1002_00079 at 86.133 kb on - strand, within MIT1002_00079 at 86.133 kb on - strand, within MIT1002_00079 at 86.139 kb on - strand, within MIT1002_00079 at 86.235 kb on + strand at 86.247 kb on + strand at 86.263 kb on - strand at 86.290 kb on - strand at 86.297 kb on - strand at 86.307 kb on - strand at 86.350 kb on - strand at 86.352 kb on + strand at 86.386 kb on + strand at 86.526 kb on + strand, within MIT1002_00080 at 86.606 kb on + strand, within MIT1002_00080 at 86.606 kb on + strand, within MIT1002_00080 at 86.606 kb on + strand, within MIT1002_00080 at 86.614 kb on - strand at 86.638 kb on + strand at 86.638 kb on + strand at 86.651 kb on - strand at 86.745 kb on + strand at 86.747 kb on - strand at 86.773 kb on + strand at 86.781 kb on - strand at 86.795 kb on + strand at 86.836 kb on + strand at 86.844 kb on - strand at 86.894 kb on + strand at 86.938 kb on - strand at 86.961 kb on - strand at 86.966 kb on + strand at 86.966 kb on + strand at 86.966 kb on + strand at 86.966 kb on + strand at 86.966 kb on + strand at 86.966 kb on + strand at 86.974 kb on - strand at 86.974 kb on - strand at 86.986 kb on - strand at 86.986 kb on - strand at 87.026 kb on + strand, within MIT1002_00081 at 87.047 kb on + strand, within MIT1002_00081 at 87.049 kb on + strand, within MIT1002_00081 at 87.056 kb on - strand, within MIT1002_00081 at 87.238 kb on - strand, within MIT1002_00081 at 87.243 kb on - strand, within MIT1002_00081
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 84,627 + MIT1002_00078 0.52 -0.5 84,639 + MIT1002_00078 0.52 +0.5 84,670 + MIT1002_00078 0.54 -0.9 84,678 - MIT1002_00078 0.54 +1.3 84,678 - MIT1002_00078 0.54 -0.2 84,732 + MIT1002_00078 0.57 -0.5 84,732 + MIT1002_00078 0.57 -0.7 84,750 - MIT1002_00078 0.58 +0.7 84,756 + MIT1002_00078 0.59 -2.5 84,801 - MIT1002_00078 0.61 +1.3 84,801 - MIT1002_00078 0.61 +0.1 84,910 - MIT1002_00078 0.68 +1.7 84,914 + MIT1002_00078 0.68 -0.3 85,002 - MIT1002_00078 0.73 -0.6 85,023 + MIT1002_00078 0.74 +0.4 85,031 - MIT1002_00078 0.74 -0.5 85,201 + MIT1002_00078 0.84 -0.5 85,201 + MIT1002_00078 0.84 -1.3 85,233 + MIT1002_00078 0.86 -0.2 85,233 + MIT1002_00078 0.86 +0.7 85,259 - MIT1002_00078 0.87 +0.1 85,279 + MIT1002_00078 0.88 -0.7 85,290 + MIT1002_00078 0.89 -1.0 85,350 + -2.3 85,360 + -0.2 85,388 + +1.2 85,418 + -1.4 85,463 + -0.4 85,463 + -1.5 85,463 - -0.3 85,471 - -2.2 85,582 + +0.7 85,679 - -1.4 85,912 - MIT1002_00079 0.46 -0.1 85,913 + MIT1002_00079 0.46 +0.9 85,987 + MIT1002_00079 0.58 -0.6 85,997 + MIT1002_00079 0.59 -0.4 85,997 + MIT1002_00079 0.59 +0.6 86,051 + MIT1002_00079 0.68 +0.3 86,051 + MIT1002_00079 0.68 -0.9 86,106 + MIT1002_00079 0.77 +0.9 86,114 - MIT1002_00079 0.78 -2.1 86,120 + MIT1002_00079 0.79 +1.0 86,125 + MIT1002_00079 0.80 -1.5 86,131 + MIT1002_00079 0.80 +0.3 86,131 + MIT1002_00079 0.80 -0.9 86,131 + MIT1002_00079 0.80 -0.6 86,133 - MIT1002_00079 0.81 -1.1 86,133 - MIT1002_00079 0.81 +0.5 86,139 - MIT1002_00079 0.82 -0.6 86,235 + +1.4 86,247 + +0.7 86,263 - -0.7 86,290 - +1.0 86,297 - -0.7 86,307 - +0.1 86,350 - -1.2 86,352 + -1.5 86,386 + -0.4 86,526 + MIT1002_00080 0.55 -1.0 86,606 + MIT1002_00080 0.87 +0.7 86,606 + MIT1002_00080 0.87 -1.5 86,606 + MIT1002_00080 0.87 -0.7 86,614 - +0.5 86,638 + -0.9 86,638 + +0.2 86,651 - -0.1 86,745 + -0.7 86,747 - +0.3 86,773 + -0.7 86,781 - -1.0 86,795 + -2.1 86,836 + +0.9 86,844 - +0.8 86,894 + -0.7 86,938 - -2.0 86,961 - +0.1 86,966 + +0.3 86,966 + -1.5 86,966 + -0.6 86,966 + +0.5 86,966 + -1.6 86,966 + +0.4 86,974 - +0.9 86,974 - +0.4 86,986 - -0.3 86,986 - +0.4 87,026 + MIT1002_00081 0.14 +0.0 87,047 + MIT1002_00081 0.19 +0.1 87,049 + MIT1002_00081 0.19 +0.9 87,056 - MIT1002_00081 0.21 -2.3 87,238 - MIT1002_00081 0.64 -1.1 87,243 - MIT1002_00081 0.65 +0.9
Or see this region's nucleotide sequence