Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00062

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00061 and MIT1002_00062 are separated by 9 nucleotidesMIT1002_00062 and MIT1002_00063 are separated by 163 nucleotides MIT1002_00061: MIT1002_00061 - hypothetical protein, at 65,060 to 66,235 _00061 MIT1002_00062: MIT1002_00062 - Bacteriophytochrome cph2, at 66,245 to 68,689 _00062 MIT1002_00063: MIT1002_00063 - 2-amino-3-ketobutyrate coenzyme A ligase, at 68,853 to 70,049 _00063 Position (kb) 66 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 65.313 kb on + strand, within MIT1002_00061at 65.318 kb on + strand, within MIT1002_00061at 65.324 kb on + strand, within MIT1002_00061at 65.357 kb on - strand, within MIT1002_00061at 65.375 kb on + strand, within MIT1002_00061at 65.427 kb on + strand, within MIT1002_00061at 65.459 kb on + strand, within MIT1002_00061at 65.462 kb on - strand, within MIT1002_00061at 65.509 kb on - strand, within MIT1002_00061at 65.529 kb on + strand, within MIT1002_00061at 65.539 kb on + strand, within MIT1002_00061at 65.544 kb on - strand, within MIT1002_00061at 65.549 kb on - strand, within MIT1002_00061at 65.638 kb on - strand, within MIT1002_00061at 65.732 kb on - strand, within MIT1002_00061at 65.790 kb on + strand, within MIT1002_00061at 65.798 kb on - strand, within MIT1002_00061at 65.798 kb on - strand, within MIT1002_00061at 65.852 kb on - strand, within MIT1002_00061at 65.853 kb on - strand, within MIT1002_00061at 65.853 kb on - strand, within MIT1002_00061at 65.863 kb on - strand, within MIT1002_00061at 65.870 kb on + strand, within MIT1002_00061at 65.870 kb on + strand, within MIT1002_00061at 65.885 kb on + strand, within MIT1002_00061at 65.916 kb on + strand, within MIT1002_00061at 65.974 kb on - strand, within MIT1002_00061at 66.005 kb on + strand, within MIT1002_00061at 66.066 kb on + strand, within MIT1002_00061at 66.072 kb on + strand, within MIT1002_00061at 66.082 kb on + strand, within MIT1002_00061at 66.108 kb on - strand, within MIT1002_00061at 66.124 kb on + strandat 66.137 kb on - strandat 66.142 kb on + strandat 66.148 kb on + strandat 66.149 kb on + strandat 66.165 kb on + strandat 66.166 kb on + strandat 66.306 kb on + strandat 66.422 kb on + strandat 66.449 kb on - strandat 66.486 kb on + strandat 66.494 kb on - strand, within MIT1002_00062at 66.589 kb on - strand, within MIT1002_00062at 66.626 kb on + strand, within MIT1002_00062at 66.628 kb on + strand, within MIT1002_00062at 66.636 kb on - strand, within MIT1002_00062at 66.644 kb on - strand, within MIT1002_00062at 66.665 kb on + strand, within MIT1002_00062at 66.673 kb on - strand, within MIT1002_00062at 66.721 kb on + strand, within MIT1002_00062at 66.767 kb on + strand, within MIT1002_00062at 66.772 kb on - strand, within MIT1002_00062at 66.776 kb on - strand, within MIT1002_00062at 66.789 kb on + strand, within MIT1002_00062at 66.789 kb on + strand, within MIT1002_00062at 66.828 kb on - strand, within MIT1002_00062at 66.842 kb on - strand, within MIT1002_00062at 66.961 kb on - strand, within MIT1002_00062at 67.012 kb on + strand, within MIT1002_00062at 67.173 kb on + strand, within MIT1002_00062at 67.190 kb on + strand, within MIT1002_00062at 67.233 kb on - strand, within MIT1002_00062at 67.391 kb on + strand, within MIT1002_00062at 67.481 kb on - strand, within MIT1002_00062at 67.494 kb on + strand, within MIT1002_00062at 67.502 kb on - strand, within MIT1002_00062at 67.538 kb on - strand, within MIT1002_00062at 67.538 kb on - strand, within MIT1002_00062at 67.538 kb on - strand, within MIT1002_00062at 67.538 kb on - strand, within MIT1002_00062at 67.583 kb on - strand, within MIT1002_00062at 67.669 kb on + strand, within MIT1002_00062at 67.677 kb on - strand, within MIT1002_00062at 67.714 kb on - strand, within MIT1002_00062at 67.724 kb on + strand, within MIT1002_00062at 67.788 kb on - strand, within MIT1002_00062at 67.796 kb on - strand, within MIT1002_00062at 67.830 kb on - strand, within MIT1002_00062at 67.879 kb on + strand, within MIT1002_00062at 67.879 kb on + strand, within MIT1002_00062at 67.908 kb on + strand, within MIT1002_00062at 67.908 kb on + strand, within MIT1002_00062at 67.908 kb on + strand, within MIT1002_00062at 67.914 kb on - strand, within MIT1002_00062at 67.916 kb on - strand, within MIT1002_00062at 67.927 kb on - strand, within MIT1002_00062at 67.963 kb on - strand, within MIT1002_00062at 67.983 kb on - strand, within MIT1002_00062at 68.014 kb on - strand, within MIT1002_00062at 68.019 kb on - strand, within MIT1002_00062at 68.060 kb on - strand, within MIT1002_00062at 68.108 kb on + strand, within MIT1002_00062at 68.111 kb on - strand, within MIT1002_00062at 68.202 kb on - strand, within MIT1002_00062at 68.263 kb on + strand, within MIT1002_00062at 68.271 kb on - strand, within MIT1002_00062at 68.276 kb on - strand, within MIT1002_00062at 68.399 kb on + strand, within MIT1002_00062at 68.458 kb on + strandat 68.471 kb on - strandat 68.486 kb on - strandat 68.587 kb on + strandat 68.599 kb on - strandat 68.627 kb on - strandat 68.650 kb on - strandat 68.712 kb on + strandat 68.712 kb on + strandat 68.729 kb on + strandat 68.730 kb on - strandat 68.734 kb on + strandat 68.769 kb on + strandat 68.769 kb on + strandat 68.777 kb on - strandat 68.786 kb on + strandat 68.786 kb on + strandat 68.787 kb on - strandat 68.794 kb on - strandat 68.855 kb on + strandat 68.985 kb on + strand, within MIT1002_00063at 69.054 kb on + strand, within MIT1002_00063at 69.162 kb on - strand, within MIT1002_00063at 69.224 kb on - strand, within MIT1002_00063at 69.257 kb on - strand, within MIT1002_00063at 69.269 kb on + strand, within MIT1002_00063at 69.277 kb on + strand, within MIT1002_00063at 69.287 kb on + strand, within MIT1002_00063at 69.287 kb on + strand, within MIT1002_00063at 69.307 kb on - strand, within MIT1002_00063at 69.344 kb on + strand, within MIT1002_00063at 69.466 kb on - strand, within MIT1002_00063at 69.526 kb on + strand, within MIT1002_00063at 69.533 kb on + strand, within MIT1002_00063at 69.548 kb on - strand, within MIT1002_00063at 69.585 kb on + strand, within MIT1002_00063at 69.585 kb on + strand, within MIT1002_00063at 69.590 kb on + strand, within MIT1002_00063at 69.593 kb on - strand, within MIT1002_00063at 69.593 kb on - strand, within MIT1002_00063at 69.607 kb on + strand, within MIT1002_00063

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
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65,313 + MIT1002_00061 0.22 -0.1
65,318 + MIT1002_00061 0.22 +1.1
65,324 + MIT1002_00061 0.22 -0.5
65,357 - MIT1002_00061 0.25 -1.1
65,375 + MIT1002_00061 0.27 -0.6
65,427 + MIT1002_00061 0.31 +0.4
65,459 + MIT1002_00061 0.34 -0.5
65,462 - MIT1002_00061 0.34 -0.2
65,509 - MIT1002_00061 0.38 -0.7
65,529 + MIT1002_00061 0.40 -0.6
65,539 + MIT1002_00061 0.41 -2.8
65,544 - MIT1002_00061 0.41 -0.3
65,549 - MIT1002_00061 0.42 -0.3
65,638 - MIT1002_00061 0.49 +0.4
65,732 - MIT1002_00061 0.57 +1.9
65,790 + MIT1002_00061 0.62 +2.1
65,798 - MIT1002_00061 0.63 +0.5
65,798 - MIT1002_00061 0.63 +0.4
65,852 - MIT1002_00061 0.67 +4.0
65,853 - MIT1002_00061 0.67 -0.2
65,853 - MIT1002_00061 0.67 -2.2
65,863 - MIT1002_00061 0.68 +0.1
65,870 + MIT1002_00061 0.69 -1.0
65,870 + MIT1002_00061 0.69 +0.9
65,885 + MIT1002_00061 0.70 -1.1
65,916 + MIT1002_00061 0.73 -0.1
65,974 - MIT1002_00061 0.78 -0.1
66,005 + MIT1002_00061 0.80 -0.9
66,066 + MIT1002_00061 0.86 +1.2
66,072 + MIT1002_00061 0.86 +2.1
66,082 + MIT1002_00061 0.87 -2.7
66,108 - MIT1002_00061 0.89 +0.6
66,124 + +0.2
66,137 - +1.1
66,142 + -2.5
66,148 + -0.4
66,149 + +1.0
66,165 + -0.6
66,166 + +0.3
66,306 + -0.9
66,422 + -0.2
66,449 - -1.6
66,486 + +0.9
66,494 - MIT1002_00062 0.10 +1.0
66,589 - MIT1002_00062 0.14 -0.4
66,626 + MIT1002_00062 0.16 +2.5
66,628 + MIT1002_00062 0.16 -1.7
66,636 - MIT1002_00062 0.16 +0.5
66,644 - MIT1002_00062 0.16 +3.4
66,665 + MIT1002_00062 0.17 -1.8
66,673 - MIT1002_00062 0.18 +0.3
66,721 + MIT1002_00062 0.19 +2.0
66,767 + MIT1002_00062 0.21 -0.1
66,772 - MIT1002_00062 0.22 +0.9
66,776 - MIT1002_00062 0.22 +0.7
66,789 + MIT1002_00062 0.22 -0.5
66,789 + MIT1002_00062 0.22 +1.2
66,828 - MIT1002_00062 0.24 -0.9
66,842 - MIT1002_00062 0.24 -0.8
66,961 - MIT1002_00062 0.29 +0.6
67,012 + MIT1002_00062 0.31 +2.2
67,173 + MIT1002_00062 0.38 +1.0
67,190 + MIT1002_00062 0.39 +0.9
67,233 - MIT1002_00062 0.40 -1.3
67,391 + MIT1002_00062 0.47 -1.2
67,481 - MIT1002_00062 0.51 +0.4
67,494 + MIT1002_00062 0.51 -0.6
67,502 - MIT1002_00062 0.51 -2.0
67,538 - MIT1002_00062 0.53 -0.2
67,538 - MIT1002_00062 0.53 -0.5
67,538 - MIT1002_00062 0.53 +0.4
67,538 - MIT1002_00062 0.53 -0.2
67,583 - MIT1002_00062 0.55 -0.5
67,669 + MIT1002_00062 0.58 -1.2
67,677 - MIT1002_00062 0.59 -0.5
67,714 - MIT1002_00062 0.60 -0.2
67,724 + MIT1002_00062 0.60 -1.1
67,788 - MIT1002_00062 0.63 +1.5
67,796 - MIT1002_00062 0.63 +0.9
67,830 - MIT1002_00062 0.65 -1.0
67,879 + MIT1002_00062 0.67 -0.1
67,879 + MIT1002_00062 0.67 +0.6
67,908 + MIT1002_00062 0.68 -2.2
67,908 + MIT1002_00062 0.68 -0.0
67,908 + MIT1002_00062 0.68 -0.2
67,914 - MIT1002_00062 0.68 -1.6
67,916 - MIT1002_00062 0.68 +0.3
67,927 - MIT1002_00062 0.69 +1.6
67,963 - MIT1002_00062 0.70 -1.3
67,983 - MIT1002_00062 0.71 +0.1
68,014 - MIT1002_00062 0.72 -0.4
68,019 - MIT1002_00062 0.73 -1.0
68,060 - MIT1002_00062 0.74 -0.4
68,108 + MIT1002_00062 0.76 -0.2
68,111 - MIT1002_00062 0.76 -0.6
68,202 - MIT1002_00062 0.80 +1.8
68,263 + MIT1002_00062 0.83 -0.2
68,271 - MIT1002_00062 0.83 +0.6
68,276 - MIT1002_00062 0.83 +0.9
68,399 + MIT1002_00062 0.88 -1.5
68,458 + -0.5
68,471 - -1.3
68,486 - -1.7
68,587 + -0.1
68,599 - +1.4
68,627 - +0.4
68,650 - -0.7
68,712 + -1.6
68,712 + -1.6
68,729 + +0.4
68,730 - -1.8
68,734 + +0.9
68,769 + -0.7
68,769 + +1.1
68,777 - -0.2
68,786 + +0.7
68,786 + +0.7
68,787 - -1.4
68,794 - -1.2
68,855 + -0.6
68,985 + MIT1002_00063 0.11 -1.5
69,054 + MIT1002_00063 0.17 -2.3
69,162 - MIT1002_00063 0.26 -0.0
69,224 - MIT1002_00063 0.31 +1.2
69,257 - MIT1002_00063 0.34 +0.2
69,269 + MIT1002_00063 0.35 -0.3
69,277 + MIT1002_00063 0.35 +0.5
69,287 + MIT1002_00063 0.36 -1.5
69,287 + MIT1002_00063 0.36 +1.2
69,307 - MIT1002_00063 0.38 -2.9
69,344 + MIT1002_00063 0.41 +0.9
69,466 - MIT1002_00063 0.51 +0.7
69,526 + MIT1002_00063 0.56 +1.7
69,533 + MIT1002_00063 0.57 +1.7
69,548 - MIT1002_00063 0.58 +0.2
69,585 + MIT1002_00063 0.61 -1.5
69,585 + MIT1002_00063 0.61 +1.5
69,590 + MIT1002_00063 0.62 -0.8
69,593 - MIT1002_00063 0.62 -0.2
69,593 - MIT1002_00063 0.62 +1.2
69,607 + MIT1002_00063 0.63 -3.3

Or see this region's nucleotide sequence