Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00014 and MIT1002_00015 are separated by 421 nucleotides MIT1002_00015 and MIT1002_00016 are separated by 265 nucleotides
MIT1002_00014: MIT1002_00014 - DNA polymerase I, at 14,887 to 17,679
_00014
MIT1002_00015: MIT1002_00015 - Sigma cross-reacting protein 27A, at 18,101 to 18,754
_00015
MIT1002_00016: MIT1002_00016 - Trk system potassium uptake protein TrkH, at 19,020 to 20,471
_00016
Position (kb) 18
19 Strain fitness (log2 ratio) -1
0
1
2
3 at 17.728 kb on - strand at 17.728 kb on - strand at 17.733 kb on - strand at 17.733 kb on - strand at 17.733 kb on - strand at 17.733 kb on - strand at 17.733 kb on - strand at 17.755 kb on + strand at 17.756 kb on + strand at 17.764 kb on - strand at 17.990 kb on + strand at 18.003 kb on - strand at 18.007 kb on + strand at 18.129 kb on + strand at 18.129 kb on + strand at 18.152 kb on + strand at 18.160 kb on - strand at 18.160 kb on - strand at 18.160 kb on - strand at 18.160 kb on - strand at 18.219 kb on - strand, within MIT1002_00015 at 18.273 kb on - strand, within MIT1002_00015 at 18.309 kb on + strand, within MIT1002_00015 at 18.314 kb on + strand, within MIT1002_00015 at 18.322 kb on - strand, within MIT1002_00015 at 18.351 kb on - strand, within MIT1002_00015 at 18.403 kb on - strand, within MIT1002_00015 at 18.451 kb on + strand, within MIT1002_00015 at 18.471 kb on - strand, within MIT1002_00015 at 18.595 kb on - strand, within MIT1002_00015 at 18.606 kb on - strand, within MIT1002_00015 at 18.609 kb on + strand, within MIT1002_00015 at 18.611 kb on + strand, within MIT1002_00015 at 18.611 kb on + strand, within MIT1002_00015 at 18.616 kb on + strand, within MIT1002_00015 at 18.619 kb on - strand, within MIT1002_00015 at 18.619 kb on - strand, within MIT1002_00015 at 18.626 kb on + strand, within MIT1002_00015 at 18.666 kb on - strand, within MIT1002_00015 at 18.682 kb on - strand, within MIT1002_00015 at 18.684 kb on - strand, within MIT1002_00015 at 18.701 kb on - strand at 18.706 kb on - strand at 18.706 kb on - strand at 18.727 kb on + strand at 18.727 kb on + strand at 18.822 kb on + strand at 18.822 kb on + strand at 18.836 kb on + strand at 18.856 kb on + strand at 18.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 6 remove 17,728 - -0.4 17,728 - +1.6 17,733 - +0.9 17,733 - -0.6 17,733 - -0.8 17,733 - +0.9 17,733 - +0.8 17,755 + +0.5 17,756 + -1.1 17,764 - -0.8 17,990 + -0.0 18,003 - +1.1 18,007 + +0.4 18,129 + +1.7 18,129 + +0.7 18,152 + +1.2 18,160 - +1.6 18,160 - -1.6 18,160 - +0.5 18,160 - +1.7 18,219 - MIT1002_00015 0.18 -0.1 18,273 - MIT1002_00015 0.26 +1.2 18,309 + MIT1002_00015 0.32 +1.0 18,314 + MIT1002_00015 0.33 -1.1 18,322 - MIT1002_00015 0.34 -0.1 18,351 - MIT1002_00015 0.38 +1.8 18,403 - MIT1002_00015 0.46 +1.4 18,451 + MIT1002_00015 0.54 +0.6 18,471 - MIT1002_00015 0.57 -0.4 18,595 - MIT1002_00015 0.76 +2.9 18,606 - MIT1002_00015 0.77 +0.3 18,609 + MIT1002_00015 0.78 +2.3 18,611 + MIT1002_00015 0.78 +2.6 18,611 + MIT1002_00015 0.78 +0.2 18,616 + MIT1002_00015 0.79 -0.9 18,619 - MIT1002_00015 0.79 +0.9 18,619 - MIT1002_00015 0.79 +0.6 18,626 + MIT1002_00015 0.80 +1.0 18,666 - MIT1002_00015 0.86 +1.5 18,682 - MIT1002_00015 0.89 +1.5 18,684 - MIT1002_00015 0.89 -0.8 18,701 - +1.4 18,706 - +0.1 18,706 - -0.2 18,727 + +0.5 18,727 + +0.2 18,822 + +0.5 18,822 + -0.6 18,836 + +0.5 18,856 + +0.2 18,880 + +0.5
Or see this region's nucleotide sequence