Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS42765

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS42750 and QEN71_RS42755 are separated by 166 nucleotidesQEN71_RS42755 and QEN71_RS42760 are separated by 35 nucleotidesQEN71_RS42760 and QEN71_RS42765 are separated by 16 nucleotidesQEN71_RS42765 and QEN71_RS42770 are separated by 203 nucleotides QEN71_RS42750: QEN71_RS42750 - tyrosine-type recombinase/integrase, at 30,669 to 31,307 _RS42750 QEN71_RS42755: QEN71_RS42755 - IS3 family transposase, at 31,474 to 31,557 _RS42755 QEN71_RS42760: QEN71_RS42760 - transposase domain-containing protein, at 31,593 to 31,799 _RS42760 QEN71_RS42765: QEN71_RS42765 - IS5 family transposase, at 31,816 to 32,628 _RS42765 QEN71_RS42770: QEN71_RS42770 - site-specific integrase, at 32,832 to 33,710 _RS42770 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1at 30.821 kb on - strand, within QEN71_RS42750at 30.911 kb on + strand, within QEN71_RS42750at 30.911 kb on + strand, within QEN71_RS42750at 30.911 kb on + strand, within QEN71_RS42750at 30.912 kb on - strand, within QEN71_RS42750at 30.990 kb on + strand, within QEN71_RS42750at 31.019 kb on + strand, within QEN71_RS42750at 31.020 kb on - strand, within QEN71_RS42750at 31.020 kb on - strand, within QEN71_RS42750at 31.020 kb on - strand, within QEN71_RS42750at 31.020 kb on - strand, within QEN71_RS42750at 31.165 kb on + strand, within QEN71_RS42750at 31.187 kb on + strand, within QEN71_RS42750at 31.296 kb on + strandat 31.409 kb on + strandat 31.429 kb on + strandat 31.429 kb on + strandat 31.429 kb on + strandat 31.493 kb on + strand, within QEN71_RS42755at 31.530 kb on + strand, within QEN71_RS42755at 31.531 kb on - strand, within QEN71_RS42755at 31.531 kb on - strand, within QEN71_RS42755at 31.544 kb on + strand, within QEN71_RS42755at 31.544 kb on + strand, within QEN71_RS42755at 31.545 kb on - strand, within QEN71_RS42755at 31.545 kb on - strand, within QEN71_RS42755at 31.561 kb on - strandat 31.561 kb on - strandat 31.561 kb on - strandat 31.805 kb on - strandat 31.808 kb on - strandat 31.832 kb on - strandat 32.662 kb on + strandat 32.769 kb on + strandat 32.991 kb on + strand, within QEN71_RS42770at 32.992 kb on - strand, within QEN71_RS42770at 33.409 kb on + strand, within QEN71_RS42770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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30,821 - QEN71_RS42750 0.24 +0.6
30,911 + QEN71_RS42750 0.38 +0.9
30,911 + QEN71_RS42750 0.38 +0.5
30,911 + QEN71_RS42750 0.38 -0.6
30,912 - QEN71_RS42750 0.38 -0.2
30,990 + QEN71_RS42750 0.50 -0.2
31,019 + QEN71_RS42750 0.55 -0.6
31,020 - QEN71_RS42750 0.55 -0.9
31,020 - QEN71_RS42750 0.55 -0.1
31,020 - QEN71_RS42750 0.55 -0.5
31,020 - QEN71_RS42750 0.55 -0.1
31,165 + QEN71_RS42750 0.78 -0.2
31,187 + QEN71_RS42750 0.81 -0.2
31,296 + +1.0
31,409 + +0.2
31,429 + -1.2
31,429 + -0.8
31,429 + +0.2
31,493 + QEN71_RS42755 0.23 -0.7
31,530 + QEN71_RS42755 0.67 -1.0
31,531 - QEN71_RS42755 0.68 +0.3
31,531 - QEN71_RS42755 0.68 +0.3
31,544 + QEN71_RS42755 0.83 -0.0
31,544 + QEN71_RS42755 0.83 +0.3
31,545 - QEN71_RS42755 0.85 -2.3
31,545 - QEN71_RS42755 0.85 -0.5
31,561 - -0.5
31,561 - +0.8
31,561 - -0.7
31,805 - +0.5
31,808 - -1.4
31,832 - -0.2
32,662 + -1.5
32,769 + -0.4
32,991 + QEN71_RS42770 0.18 -0.2
32,992 - QEN71_RS42770 0.18 -0.8
33,409 + QEN71_RS42770 0.66 -2.5

Or see this region's nucleotide sequence