Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37145

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37135 and QEN71_RS37140 are separated by 184 nucleotidesQEN71_RS37140 and QEN71_RS37145 are separated by 132 nucleotidesQEN71_RS37145 and QEN71_RS37150 are separated by 15 nucleotidesQEN71_RS37150 and QEN71_RS37155 are separated by 250 nucleotidesQEN71_RS37155 and QEN71_RS37160 overlap by 4 nucleotides QEN71_RS37135: QEN71_RS37135 - HDOD domain-containing protein, at 1,699,231 to 1,700,697 _RS37135 QEN71_RS37140: QEN71_RS37140 - DUF3331 domain-containing protein, at 1,700,882 to 1,701,277 _RS37140 QEN71_RS37145: QEN71_RS37145 - TetR family transcriptional regulator, at 1,701,410 to 1,702,069 _RS37145 QEN71_RS37150: QEN71_RS37150 - hypothetical protein, at 1,702,085 to 1,702,354 _RS37150 QEN71_RS37155: QEN71_RS37155 - LysR substrate-binding domain-containing protein, at 1,702,605 to 1,703,015 _RS37155 QEN71_RS37160: QEN71_RS37160 - M14 family metallopeptidase, at 1,703,012 to 1,704,385 _RS37160 Position (kb) 1701 1702 1703Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1700.469 kb on + strand, within QEN71_RS37135at 1700.469 kb on + strand, within QEN71_RS37135at 1700.469 kb on + strand, within QEN71_RS37135at 1700.469 kb on + strand, within QEN71_RS37135at 1700.470 kb on - strand, within QEN71_RS37135at 1700.470 kb on - strand, within QEN71_RS37135at 1700.489 kb on + strand, within QEN71_RS37135at 1700.489 kb on + strand, within QEN71_RS37135at 1700.489 kb on + strand, within QEN71_RS37135at 1700.489 kb on + strand, within QEN71_RS37135at 1700.489 kb on + strand, within QEN71_RS37135at 1700.489 kb on + strand, within QEN71_RS37135at 1700.489 kb on + strand, within QEN71_RS37135at 1700.489 kb on + strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.490 kb on - strand, within QEN71_RS37135at 1700.584 kb on - strandat 1700.719 kb on + strandat 1700.720 kb on - strandat 1700.720 kb on - strandat 1700.720 kb on - strandat 1700.720 kb on - strandat 1700.752 kb on + strandat 1700.752 kb on + strandat 1700.792 kb on + strandat 1700.792 kb on + strandat 1700.792 kb on + strandat 1700.792 kb on + strandat 1700.792 kb on + strandat 1700.793 kb on - strandat 1700.793 kb on - strandat 1700.793 kb on - strandat 1700.793 kb on - strandat 1700.834 kb on + strandat 1700.834 kb on + strandat 1700.834 kb on + strandat 1700.835 kb on - strandat 1700.835 kb on - strandat 1700.835 kb on - strandat 1700.870 kb on + strandat 1700.870 kb on + strandat 1700.870 kb on + strandat 1700.870 kb on + strandat 1700.870 kb on + strandat 1700.870 kb on + strandat 1700.870 kb on + strandat 1700.870 kb on + strandat 1700.870 kb on + strandat 1700.870 kb on + strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.871 kb on - strandat 1700.893 kb on + strandat 1700.894 kb on - strandat 1700.955 kb on + strand, within QEN71_RS37140at 1700.956 kb on - strand, within QEN71_RS37140at 1700.956 kb on - strand, within QEN71_RS37140at 1700.956 kb on - strand, within QEN71_RS37140at 1700.956 kb on - strand, within QEN71_RS37140at 1701.281 kb on + strandat 1701.282 kb on - strandat 1701.282 kb on - strandat 1701.300 kb on + strandat 1701.312 kb on - strandat 1701.312 kb on - strandat 1701.857 kb on + strand, within QEN71_RS37145at 1701.974 kb on + strand, within QEN71_RS37145at 1702.067 kb on + strandat 1702.113 kb on + strand, within QEN71_RS37150at 1702.113 kb on + strand, within QEN71_RS37150at 1702.114 kb on - strand, within QEN71_RS37150at 1702.114 kb on - strand, within QEN71_RS37150at 1702.114 kb on - strand, within QEN71_RS37150at 1702.182 kb on + strand, within QEN71_RS37150at 1702.182 kb on + strand, within QEN71_RS37150at 1702.182 kb on + strand, within QEN71_RS37150at 1702.183 kb on - strand, within QEN71_RS37150at 1702.218 kb on + strand, within QEN71_RS37150at 1702.219 kb on - strand, within QEN71_RS37150at 1702.225 kb on - strand, within QEN71_RS37150at 1702.269 kb on + strand, within QEN71_RS37150at 1702.269 kb on + strand, within QEN71_RS37150at 1702.270 kb on - strand, within QEN71_RS37150at 1702.270 kb on - strand, within QEN71_RS37150at 1702.270 kb on - strand, within QEN71_RS37150at 1702.359 kb on - strandat 1702.388 kb on + strandat 1702.388 kb on + strandat 1702.388 kb on + strandat 1702.388 kb on + strandat 1702.388 kb on + strandat 1702.388 kb on + strandat 1702.389 kb on - strandat 1702.389 kb on - strandat 1702.389 kb on - strandat 1702.393 kb on - strandat 1702.454 kb on + strandat 1702.454 kb on + strandat 1702.455 kb on - strandat 1702.478 kb on + strandat 1702.479 kb on - strandat 1702.479 kb on - strandat 1702.479 kb on - strandat 1702.768 kb on + strand, within QEN71_RS37155at 1703.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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1,700,469 + QEN71_RS37135 0.84 -1.5
1,700,469 + QEN71_RS37135 0.84 -0.0
1,700,469 + QEN71_RS37135 0.84 -1.1
1,700,469 + QEN71_RS37135 0.84 -0.5
1,700,470 - QEN71_RS37135 0.84 +1.6
1,700,470 - QEN71_RS37135 0.84 -2.5
1,700,489 + QEN71_RS37135 0.86 +0.2
1,700,489 + QEN71_RS37135 0.86 -0.4
1,700,489 + QEN71_RS37135 0.86 -1.5
1,700,489 + QEN71_RS37135 0.86 -2.0
1,700,489 + QEN71_RS37135 0.86 -1.2
1,700,489 + QEN71_RS37135 0.86 +0.5
1,700,489 + QEN71_RS37135 0.86 -1.6
1,700,489 + QEN71_RS37135 0.86 -0.8
1,700,490 - QEN71_RS37135 0.86 +1.8
1,700,490 - QEN71_RS37135 0.86 +0.2
1,700,490 - QEN71_RS37135 0.86 -1.8
1,700,490 - QEN71_RS37135 0.86 -0.3
1,700,490 - QEN71_RS37135 0.86 -0.4
1,700,490 - QEN71_RS37135 0.86 +0.7
1,700,490 - QEN71_RS37135 0.86 -2.4
1,700,490 - QEN71_RS37135 0.86 -0.9
1,700,490 - QEN71_RS37135 0.86 -0.3
1,700,490 - QEN71_RS37135 0.86 -1.7
1,700,490 - QEN71_RS37135 0.86 +1.2
1,700,490 - QEN71_RS37135 0.86 -0.3
1,700,490 - QEN71_RS37135 0.86 -0.1
1,700,490 - QEN71_RS37135 0.86 -1.6
1,700,490 - QEN71_RS37135 0.86 -0.7
1,700,490 - QEN71_RS37135 0.86 -0.6
1,700,490 - QEN71_RS37135 0.86 +0.9
1,700,584 - +0.6
1,700,719 + -0.0
1,700,720 - +0.4
1,700,720 - -0.4
1,700,720 - +0.1
1,700,720 - +1.3
1,700,752 + -0.4
1,700,752 + -0.2
1,700,792 + -1.3
1,700,792 + +1.2
1,700,792 + -1.6
1,700,792 + -0.5
1,700,792 + -2.5
1,700,793 - -0.9
1,700,793 - -0.0
1,700,793 - +0.2
1,700,793 - -1.1
1,700,834 + -0.5
1,700,834 + -0.1
1,700,834 + +0.3
1,700,835 - -0.3
1,700,835 - -1.2
1,700,835 - -1.0
1,700,870 + -2.0
1,700,870 + -0.8
1,700,870 + -2.3
1,700,870 + -0.0
1,700,870 + -1.5
1,700,870 + -1.8
1,700,870 + +0.2
1,700,870 + +0.1
1,700,870 + -0.5
1,700,870 + -2.6
1,700,871 - +0.4
1,700,871 - +0.6
1,700,871 - -0.6
1,700,871 - +0.1
1,700,871 - -1.8
1,700,871 - -2.2
1,700,871 - +2.5
1,700,871 - +0.0
1,700,871 - -0.1
1,700,871 - +1.2
1,700,871 - +0.0
1,700,871 - -2.1
1,700,871 - -1.7
1,700,871 - +0.1
1,700,893 + +0.2
1,700,894 - -0.2
1,700,955 + QEN71_RS37140 0.18 -1.9
1,700,956 - QEN71_RS37140 0.19 -1.6
1,700,956 - QEN71_RS37140 0.19 -0.5
1,700,956 - QEN71_RS37140 0.19 +0.3
1,700,956 - QEN71_RS37140 0.19 -0.4
1,701,281 + -0.4
1,701,282 - +0.2
1,701,282 - +0.6
1,701,300 + -0.2
1,701,312 - +1.1
1,701,312 - +0.3
1,701,857 + QEN71_RS37145 0.68 -1.3
1,701,974 + QEN71_RS37145 0.85 +0.1
1,702,067 + -0.1
1,702,113 + QEN71_RS37150 0.10 +0.2
1,702,113 + QEN71_RS37150 0.10 -0.6
1,702,114 - QEN71_RS37150 0.11 +0.0
1,702,114 - QEN71_RS37150 0.11 -1.2
1,702,114 - QEN71_RS37150 0.11 +1.2
1,702,182 + QEN71_RS37150 0.36 +0.9
1,702,182 + QEN71_RS37150 0.36 +0.2
1,702,182 + QEN71_RS37150 0.36 +0.2
1,702,183 - QEN71_RS37150 0.36 +0.2
1,702,218 + QEN71_RS37150 0.49 +0.2
1,702,219 - QEN71_RS37150 0.50 -1.2
1,702,225 - QEN71_RS37150 0.52 +1.2
1,702,269 + QEN71_RS37150 0.68 -0.1
1,702,269 + QEN71_RS37150 0.68 -0.4
1,702,270 - QEN71_RS37150 0.69 -0.3
1,702,270 - QEN71_RS37150 0.69 +0.0
1,702,270 - QEN71_RS37150 0.69 +0.4
1,702,359 - -0.5
1,702,388 + +0.0
1,702,388 + +0.6
1,702,388 + -0.1
1,702,388 + -0.9
1,702,388 + -0.3
1,702,388 + -0.4
1,702,389 - -0.5
1,702,389 - -0.2
1,702,389 - -0.2
1,702,393 - -2.8
1,702,454 + -0.5
1,702,454 + +1.0
1,702,455 - +0.6
1,702,478 + +0.2
1,702,479 - -1.9
1,702,479 - -0.1
1,702,479 - +0.8
1,702,768 + QEN71_RS37155 0.40 -1.7
1,703,027 - +0.1

Or see this region's nucleotide sequence