Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37000

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36995 and QEN71_RS37000 are separated by 49 nucleotidesQEN71_RS37000 and QEN71_RS37005 are separated by 1 nucleotidesQEN71_RS37005 and QEN71_RS37010 are separated by 90 nucleotides QEN71_RS36995: QEN71_RS36995 - sulfate permease, at 1,670,467 to 1,672,230 _RS36995 QEN71_RS37000: QEN71_RS37000 - YeeE/YedE thiosulfate transporter family protein, at 1,672,280 to 1,672,711 _RS37000 QEN71_RS37005: QEN71_RS37005 - YeeE/YedE family protein, at 1,672,713 to 1,673,156 _RS37005 QEN71_RS37010: QEN71_RS37010 - AMP-binding protein, at 1,673,247 to 1,674,890 _RS37010 Position (kb) 1672 1673Strain fitness (log2 ratio) -1 0 1at 1671.593 kb on - strand, within QEN71_RS36995at 1671.593 kb on - strand, within QEN71_RS36995at 1671.593 kb on - strand, within QEN71_RS36995at 1671.770 kb on + strand, within QEN71_RS36995at 1671.771 kb on - strand, within QEN71_RS36995at 1671.992 kb on + strand, within QEN71_RS36995at 1671.993 kb on - strand, within QEN71_RS36995at 1672.019 kb on + strand, within QEN71_RS36995at 1672.020 kb on - strand, within QEN71_RS36995at 1672.137 kb on - strandat 1672.281 kb on + strandat 1672.281 kb on + strandat 1672.282 kb on - strandat 1672.282 kb on - strandat 1672.282 kb on - strandat 1672.282 kb on - strandat 1672.282 kb on - strandat 1672.490 kb on + strand, within QEN71_RS37000at 1672.734 kb on + strandat 1672.734 kb on + strandat 1672.734 kb on + strandat 1672.735 kb on - strandat 1672.735 kb on - strandat 1672.742 kb on + strandat 1672.743 kb on - strandat 1672.743 kb on - strandat 1672.859 kb on - strand, within QEN71_RS37005at 1673.338 kb on + strandat 1673.338 kb on + strandat 1673.338 kb on + strandat 1673.662 kb on + strand, within QEN71_RS37010

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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1,671,593 - QEN71_RS36995 0.64 +0.1
1,671,593 - QEN71_RS36995 0.64 -1.0
1,671,593 - QEN71_RS36995 0.64 +0.0
1,671,770 + QEN71_RS36995 0.74 +1.4
1,671,771 - QEN71_RS36995 0.74 -1.6
1,671,992 + QEN71_RS36995 0.86 +0.3
1,671,993 - QEN71_RS36995 0.87 +0.3
1,672,019 + QEN71_RS36995 0.88 -1.1
1,672,020 - QEN71_RS36995 0.88 -0.3
1,672,137 - -0.2
1,672,281 + -0.3
1,672,281 + -0.1
1,672,282 - +0.6
1,672,282 - +0.1
1,672,282 - -0.9
1,672,282 - +0.2
1,672,282 - -0.9
1,672,490 + QEN71_RS37000 0.49 +0.4
1,672,734 + -1.3
1,672,734 + +0.1
1,672,734 + +1.2
1,672,735 - +0.2
1,672,735 - -0.2
1,672,742 + +0.1
1,672,743 - -0.6
1,672,743 - +0.3
1,672,859 - QEN71_RS37005 0.33 -1.0
1,673,338 + -0.6
1,673,338 + -0.7
1,673,338 + +0.3
1,673,662 + QEN71_RS37010 0.25 +1.0

Or see this region's nucleotide sequence