Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36790 and QEN71_RS36795 overlap by 16 nucleotides QEN71_RS36795 and QEN71_RS36800 overlap by 4 nucleotides QEN71_RS36800 and QEN71_RS36805 are separated by 41 nucleotides QEN71_RS36805 and QEN71_RS36810 are separated by 15 nucleotides
QEN71_RS36790: QEN71_RS36790 - type III secretion system stator protein SctL, at 1,634,356 to 1,635,111
_RS36790
QEN71_RS36795: QEN71_RS36795 - type III secretion protein HrpB4, at 1,635,096 to 1,635,818
_RS36795
QEN71_RS36800: QEN71_RS36800 - type III secretion inner membrane ring lipoprotein SctJ, at 1,635,815 to 1,636,573
_RS36800
QEN71_RS36805: QEN71_RS36805 - type III secretion protein, at 1,636,615 to 1,637,007
_RS36805
QEN71_RS36810: QEN71_RS36810 - HrpB1 family type III secretion system apparatus protein, at 1,637,023 to 1,637,616
_RS36810
Position (kb) 1635
1636
1637 Strain fitness (log2 ratio) -2
-1
0
1 at 1634.970 kb on - strand, within QEN71_RS36790 at 1635.115 kb on + strand at 1635.465 kb on + strand, within QEN71_RS36795 at 1635.916 kb on - strand, within QEN71_RS36800 at 1636.064 kb on + strand, within QEN71_RS36800 at 1636.064 kb on + strand, within QEN71_RS36800 at 1636.065 kb on - strand, within QEN71_RS36800 at 1636.065 kb on - strand, within QEN71_RS36800 at 1636.065 kb on - strand, within QEN71_RS36800 at 1636.129 kb on - strand, within QEN71_RS36800 at 1636.266 kb on + strand, within QEN71_RS36800 at 1636.517 kb on - strand at 1637.001 kb on + strand at 1637.002 kb on - strand at 1637.082 kb on + strand at 1637.082 kb on + strand at 1637.082 kb on + strand at 1637.298 kb on - strand, within QEN71_RS36810 at 1637.304 kb on - strand, within QEN71_RS36810 at 1637.318 kb on + strand, within QEN71_RS36810
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 1,634,970 - QEN71_RS36790 0.81 -0.5 1,635,115 + -0.4 1,635,465 + QEN71_RS36795 0.51 +0.2 1,635,916 - QEN71_RS36800 0.13 -0.6 1,636,064 + QEN71_RS36800 0.33 -0.5 1,636,064 + QEN71_RS36800 0.33 -0.3 1,636,065 - QEN71_RS36800 0.33 -1.4 1,636,065 - QEN71_RS36800 0.33 -0.0 1,636,065 - QEN71_RS36800 0.33 +0.5 1,636,129 - QEN71_RS36800 0.41 -0.7 1,636,266 + QEN71_RS36800 0.59 +0.4 1,636,517 - -1.9 1,637,001 + -0.4 1,637,002 - -0.0 1,637,082 + -1.5 1,637,082 + -0.2 1,637,082 + -1.1 1,637,298 - QEN71_RS36810 0.46 -0.6 1,637,304 - QEN71_RS36810 0.47 -0.9 1,637,318 + QEN71_RS36810 0.50 -1.1
Or see this region's nucleotide sequence