Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS32335

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS32330 and QEN71_RS32335 overlap by 28 nucleotidesQEN71_RS32335 and QEN71_RS32340 are separated by 15 nucleotidesQEN71_RS32340 and QEN71_RS32345 are separated by 101 nucleotides QEN71_RS32330: QEN71_RS32330 - beta-galactosidase, at 593,170 to 595,071 _RS32330 QEN71_RS32335: QEN71_RS32335 - enterotoxin, at 595,044 to 596,990 _RS32335 QEN71_RS32340: QEN71_RS32340 - antibiotic biosynthesis monooxygenase, at 597,006 to 597,320 _RS32340 QEN71_RS32345: QEN71_RS32345 - MFS transporter, at 597,422 to 598,684 _RS32345 Position (kb) 595 596 597Strain fitness (log2 ratio) -2 -1 0 1 2at 594.046 kb on + strand, within QEN71_RS32330at 594.185 kb on - strand, within QEN71_RS32330at 594.214 kb on + strand, within QEN71_RS32330at 594.382 kb on + strand, within QEN71_RS32330at 594.383 kb on - strand, within QEN71_RS32330at 594.383 kb on - strand, within QEN71_RS32330at 594.383 kb on - strand, within QEN71_RS32330at 594.383 kb on - strand, within QEN71_RS32330at 594.409 kb on + strand, within QEN71_RS32330at 594.469 kb on + strand, within QEN71_RS32330at 594.470 kb on - strand, within QEN71_RS32330at 594.497 kb on - strand, within QEN71_RS32330at 594.497 kb on - strand, within QEN71_RS32330at 594.611 kb on + strand, within QEN71_RS32330at 594.612 kb on - strand, within QEN71_RS32330at 594.834 kb on - strand, within QEN71_RS32330at 594.834 kb on - strand, within QEN71_RS32330at 594.834 kb on - strand, within QEN71_RS32330at 594.837 kb on + strand, within QEN71_RS32330at 594.837 kb on + strand, within QEN71_RS32330at 594.838 kb on - strand, within QEN71_RS32330at 594.838 kb on - strand, within QEN71_RS32330at 594.853 kb on + strand, within QEN71_RS32330at 594.853 kb on + strand, within QEN71_RS32330at 594.947 kb on - strandat 594.947 kb on - strandat 594.947 kb on - strandat 594.947 kb on - strandat 594.986 kb on + strandat 594.986 kb on + strandat 594.986 kb on + strandat 594.986 kb on + strandat 594.987 kb on - strandat 595.289 kb on - strand, within QEN71_RS32335at 595.289 kb on - strand, within QEN71_RS32335at 595.420 kb on + strand, within QEN71_RS32335at 595.420 kb on + strand, within QEN71_RS32335at 595.420 kb on + strand, within QEN71_RS32335at 595.420 kb on + strand, within QEN71_RS32335at 595.420 kb on + strand, within QEN71_RS32335at 595.454 kb on - strand, within QEN71_RS32335at 595.505 kb on + strand, within QEN71_RS32335at 595.506 kb on - strand, within QEN71_RS32335at 595.519 kb on + strand, within QEN71_RS32335at 595.519 kb on + strand, within QEN71_RS32335at 595.520 kb on - strand, within QEN71_RS32335at 595.520 kb on - strand, within QEN71_RS32335at 595.520 kb on - strand, within QEN71_RS32335at 595.520 kb on - strand, within QEN71_RS32335at 595.520 kb on - strand, within QEN71_RS32335at 595.585 kb on + strand, within QEN71_RS32335at 595.586 kb on - strand, within QEN71_RS32335at 595.586 kb on - strand, within QEN71_RS32335at 595.682 kb on - strand, within QEN71_RS32335at 595.904 kb on - strand, within QEN71_RS32335at 595.904 kb on - strand, within QEN71_RS32335at 596.038 kb on + strand, within QEN71_RS32335at 596.090 kb on + strand, within QEN71_RS32335at 596.091 kb on - strand, within QEN71_RS32335at 596.091 kb on - strand, within QEN71_RS32335at 596.216 kb on + strand, within QEN71_RS32335at 596.216 kb on + strand, within QEN71_RS32335at 596.217 kb on - strand, within QEN71_RS32335at 596.217 kb on - strand, within QEN71_RS32335at 596.217 kb on - strand, within QEN71_RS32335at 596.217 kb on - strand, within QEN71_RS32335at 596.219 kb on - strand, within QEN71_RS32335at 596.242 kb on + strand, within QEN71_RS32335at 596.254 kb on + strand, within QEN71_RS32335at 596.255 kb on - strand, within QEN71_RS32335at 596.255 kb on - strand, within QEN71_RS32335at 596.299 kb on + strand, within QEN71_RS32335at 596.299 kb on + strand, within QEN71_RS32335at 596.299 kb on + strand, within QEN71_RS32335at 596.300 kb on - strand, within QEN71_RS32335at 596.300 kb on - strand, within QEN71_RS32335at 596.300 kb on - strand, within QEN71_RS32335at 596.300 kb on - strand, within QEN71_RS32335at 596.300 kb on - strand, within QEN71_RS32335at 596.300 kb on - strand, within QEN71_RS32335at 596.300 kb on - strand, within QEN71_RS32335at 596.478 kb on - strand, within QEN71_RS32335at 596.549 kb on + strand, within QEN71_RS32335at 596.549 kb on + strand, within QEN71_RS32335at 596.550 kb on - strand, within QEN71_RS32335at 596.550 kb on - strand, within QEN71_RS32335at 596.550 kb on - strand, within QEN71_RS32335at 596.766 kb on - strand, within QEN71_RS32335at 596.766 kb on - strand, within QEN71_RS32335at 596.863 kb on + strandat 596.863 kb on + strandat 596.864 kb on - strandat 596.865 kb on + strandat 596.865 kb on + strandat 596.866 kb on - strandat 596.866 kb on - strandat 596.920 kb on + strandat 596.920 kb on + strandat 596.920 kb on + strandat 596.921 kb on - strandat 596.921 kb on - strandat 596.921 kb on - strandat 596.925 kb on - strandat 597.059 kb on - strand, within QEN71_RS32340at 597.166 kb on + strand, within QEN71_RS32340at 597.167 kb on - strand, within QEN71_RS32340at 597.358 kb on + strandat 597.360 kb on + strandat 597.360 kb on + strandat 597.361 kb on - strandat 597.458 kb on + strandat 597.458 kb on + strandat 597.458 kb on + strandat 597.459 kb on - strandat 597.459 kb on - strandat 597.459 kb on - strandat 597.459 kb on - strandat 597.891 kb on + strand, within QEN71_RS32345at 597.891 kb on + strand, within QEN71_RS32345at 597.891 kb on + strand, within QEN71_RS32345at 597.892 kb on - strand, within QEN71_RS32345at 597.892 kb on - strand, within QEN71_RS32345at 597.953 kb on + strand, within QEN71_RS32345at 597.972 kb on + strand, within QEN71_RS32345at 597.972 kb on + strand, within QEN71_RS32345

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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594,046 + QEN71_RS32330 0.46 -0.4
594,185 - QEN71_RS32330 0.53 +0.2
594,214 + QEN71_RS32330 0.55 -0.9
594,382 + QEN71_RS32330 0.64 +0.2
594,383 - QEN71_RS32330 0.64 -0.2
594,383 - QEN71_RS32330 0.64 -0.2
594,383 - QEN71_RS32330 0.64 -0.2
594,383 - QEN71_RS32330 0.64 -0.7
594,409 + QEN71_RS32330 0.65 -0.5
594,469 + QEN71_RS32330 0.68 -1.0
594,470 - QEN71_RS32330 0.68 +0.1
594,497 - QEN71_RS32330 0.70 +1.2
594,497 - QEN71_RS32330 0.70 +0.2
594,611 + QEN71_RS32330 0.76 -0.7
594,612 - QEN71_RS32330 0.76 -1.8
594,834 - QEN71_RS32330 0.87 +1.1
594,834 - QEN71_RS32330 0.87 +0.3
594,834 - QEN71_RS32330 0.87 +0.3
594,837 + QEN71_RS32330 0.88 +1.0
594,837 + QEN71_RS32330 0.88 -0.1
594,838 - QEN71_RS32330 0.88 -0.3
594,838 - QEN71_RS32330 0.88 +0.3
594,853 + QEN71_RS32330 0.88 +0.7
594,853 + QEN71_RS32330 0.88 +0.8
594,947 - -0.1
594,947 - -0.1
594,947 - +0.4
594,947 - +0.4
594,986 + -2.0
594,986 + -0.4
594,986 + +0.9
594,986 + +0.2
594,987 - -2.7
595,289 - QEN71_RS32335 0.13 -0.5
595,289 - QEN71_RS32335 0.13 +0.5
595,420 + QEN71_RS32335 0.19 -0.4
595,420 + QEN71_RS32335 0.19 +0.1
595,420 + QEN71_RS32335 0.19 +0.2
595,420 + QEN71_RS32335 0.19 +0.2
595,420 + QEN71_RS32335 0.19 -0.4
595,454 - QEN71_RS32335 0.21 -0.5
595,505 + QEN71_RS32335 0.24 +1.3
595,506 - QEN71_RS32335 0.24 -0.1
595,519 + QEN71_RS32335 0.24 +0.0
595,519 + QEN71_RS32335 0.24 +0.2
595,520 - QEN71_RS32335 0.24 -0.4
595,520 - QEN71_RS32335 0.24 -0.8
595,520 - QEN71_RS32335 0.24 -0.0
595,520 - QEN71_RS32335 0.24 +0.4
595,520 - QEN71_RS32335 0.24 -0.9
595,585 + QEN71_RS32335 0.28 -0.2
595,586 - QEN71_RS32335 0.28 -1.0
595,586 - QEN71_RS32335 0.28 +0.4
595,682 - QEN71_RS32335 0.33 +0.2
595,904 - QEN71_RS32335 0.44 +0.8
595,904 - QEN71_RS32335 0.44 -0.1
596,038 + QEN71_RS32335 0.51 +0.7
596,090 + QEN71_RS32335 0.54 +0.2
596,091 - QEN71_RS32335 0.54 +0.4
596,091 - QEN71_RS32335 0.54 -0.6
596,216 + QEN71_RS32335 0.60 +1.2
596,216 + QEN71_RS32335 0.60 -0.8
596,217 - QEN71_RS32335 0.60 +1.4
596,217 - QEN71_RS32335 0.60 +0.9
596,217 - QEN71_RS32335 0.60 +0.3
596,217 - QEN71_RS32335 0.60 -0.7
596,219 - QEN71_RS32335 0.60 +0.5
596,242 + QEN71_RS32335 0.62 +0.0
596,254 + QEN71_RS32335 0.62 +0.0
596,255 - QEN71_RS32335 0.62 -0.4
596,255 - QEN71_RS32335 0.62 -0.6
596,299 + QEN71_RS32335 0.64 -0.5
596,299 + QEN71_RS32335 0.64 -0.8
596,299 + QEN71_RS32335 0.64 +0.2
596,300 - QEN71_RS32335 0.65 +0.4
596,300 - QEN71_RS32335 0.65 -0.2
596,300 - QEN71_RS32335 0.65 -0.2
596,300 - QEN71_RS32335 0.65 +0.2
596,300 - QEN71_RS32335 0.65 -0.2
596,300 - QEN71_RS32335 0.65 +0.3
596,300 - QEN71_RS32335 0.65 +1.7
596,478 - QEN71_RS32335 0.74 +0.6
596,549 + QEN71_RS32335 0.77 -0.4
596,549 + QEN71_RS32335 0.77 +0.1
596,550 - QEN71_RS32335 0.77 -0.4
596,550 - QEN71_RS32335 0.77 -0.5
596,550 - QEN71_RS32335 0.77 -0.6
596,766 - QEN71_RS32335 0.88 -0.8
596,766 - QEN71_RS32335 0.88 +0.5
596,863 + +1.2
596,863 + +1.6
596,864 - +0.9
596,865 + -1.3
596,865 + +0.4
596,866 - -0.8
596,866 - -0.0
596,920 + -1.6
596,920 + +0.4
596,920 + -0.4
596,921 - +0.1
596,921 - +0.9
596,921 - -0.4
596,925 - -0.8
597,059 - QEN71_RS32340 0.17 -0.3
597,166 + QEN71_RS32340 0.51 -0.4
597,167 - QEN71_RS32340 0.51 +0.2
597,358 + -0.5
597,360 + +0.4
597,360 + -1.3
597,361 - +0.2
597,458 + -1.0
597,458 + -0.2
597,458 + -0.4
597,459 - -0.9
597,459 - +2.2
597,459 - +0.9
597,459 - -0.6
597,891 + QEN71_RS32345 0.37 -1.1
597,891 + QEN71_RS32345 0.37 +0.4
597,891 + QEN71_RS32345 0.37 -0.4
597,892 - QEN71_RS32345 0.37 -2.5
597,892 - QEN71_RS32345 0.37 -0.7
597,953 + QEN71_RS32345 0.42 -0.7
597,972 + QEN71_RS32345 0.44 +0.2
597,972 + QEN71_RS32345 0.44 -0.8

Or see this region's nucleotide sequence