Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS30705

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS30700 and QEN71_RS30705 are separated by 104 nucleotidesQEN71_RS30705 and QEN71_RS30710 are separated by 44 nucleotidesQEN71_RS30710 and QEN71_RS30715 overlap by 1 nucleotides QEN71_RS30700: QEN71_RS30700 - aspartate aminotransferase family protein, at 229,163 to 230,464 _RS30700 QEN71_RS30705: QEN71_RS30705 - LysR family transcriptional regulator, at 230,569 to 231,426 _RS30705 QEN71_RS30710: QEN71_RS30710 - AraC family transcriptional regulator, at 231,471 to 232,007 _RS30710 QEN71_RS30715: QEN71_RS30715 - VOC family protein, at 232,007 to 232,414 _RS30715 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2at 229.572 kb on + strand, within QEN71_RS30700at 229.789 kb on + strand, within QEN71_RS30700at 229.789 kb on + strand, within QEN71_RS30700at 229.789 kb on + strand, within QEN71_RS30700at 229.789 kb on + strand, within QEN71_RS30700at 229.789 kb on + strand, within QEN71_RS30700at 229.790 kb on - strand, within QEN71_RS30700at 229.791 kb on + strand, within QEN71_RS30700at 229.791 kb on + strand, within QEN71_RS30700at 229.791 kb on + strand, within QEN71_RS30700at 229.791 kb on + strand, within QEN71_RS30700at 229.791 kb on + strand, within QEN71_RS30700at 229.792 kb on - strand, within QEN71_RS30700at 229.792 kb on - strand, within QEN71_RS30700at 229.792 kb on - strand, within QEN71_RS30700at 229.792 kb on - strand, within QEN71_RS30700at 229.792 kb on - strand, within QEN71_RS30700at 229.792 kb on - strand, within QEN71_RS30700at 229.792 kb on - strand, within QEN71_RS30700at 229.911 kb on + strand, within QEN71_RS30700at 229.911 kb on + strand, within QEN71_RS30700at 229.912 kb on - strand, within QEN71_RS30700at 229.917 kb on + strand, within QEN71_RS30700at 229.917 kb on + strand, within QEN71_RS30700at 229.918 kb on - strand, within QEN71_RS30700at 229.918 kb on - strand, within QEN71_RS30700at 229.947 kb on + strand, within QEN71_RS30700at 229.948 kb on - strand, within QEN71_RS30700at 230.016 kb on + strand, within QEN71_RS30700at 230.017 kb on - strand, within QEN71_RS30700at 230.079 kb on + strand, within QEN71_RS30700at 230.254 kb on - strand, within QEN71_RS30700at 230.504 kb on + strandat 230.522 kb on + strandat 230.535 kb on - strandat 230.538 kb on - strandat 230.562 kb on + strandat 230.562 kb on + strandat 230.562 kb on + strandat 230.612 kb on + strandat 230.876 kb on - strand, within QEN71_RS30705at 230.876 kb on - strand, within QEN71_RS30705at 230.876 kb on - strand, within QEN71_RS30705at 231.200 kb on - strand, within QEN71_RS30705at 231.436 kb on - strandat 231.436 kb on - strandat 231.440 kb on + strandat 231.440 kb on + strandat 231.440 kb on + strandat 231.441 kb on - strandat 231.696 kb on + strand, within QEN71_RS30710at 231.696 kb on + strand, within QEN71_RS30710at 231.697 kb on - strand, within QEN71_RS30710at 231.697 kb on - strand, within QEN71_RS30710at 231.697 kb on - strand, within QEN71_RS30710at 231.971 kb on + strandat 231.971 kb on + strandat 231.972 kb on - strandat 231.972 kb on - strandat 232.001 kb on - strandat 232.019 kb on - strandat 232.019 kb on - strandat 232.037 kb on + strandat 232.038 kb on - strandat 232.070 kb on + strand, within QEN71_RS30715at 232.071 kb on - strand, within QEN71_RS30715at 232.071 kb on - strand, within QEN71_RS30715at 232.071 kb on - strand, within QEN71_RS30715at 232.071 kb on - strand, within QEN71_RS30715at 232.099 kb on + strand, within QEN71_RS30715at 232.099 kb on + strand, within QEN71_RS30715at 232.100 kb on - strand, within QEN71_RS30715at 232.289 kb on + strand, within QEN71_RS30715at 232.289 kb on + strand, within QEN71_RS30715at 232.289 kb on + strand, within QEN71_RS30715at 232.290 kb on - strand, within QEN71_RS30715at 232.290 kb on - strand, within QEN71_RS30715at 232.290 kb on - strand, within QEN71_RS30715at 232.290 kb on - strand, within QEN71_RS30715at 232.412 kb on + strandat 232.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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229,572 + QEN71_RS30700 0.31 -0.1
229,789 + QEN71_RS30700 0.48 -0.0
229,789 + QEN71_RS30700 0.48 -0.3
229,789 + QEN71_RS30700 0.48 +1.5
229,789 + QEN71_RS30700 0.48 -1.1
229,789 + QEN71_RS30700 0.48 +1.5
229,790 - QEN71_RS30700 0.48 -0.8
229,791 + QEN71_RS30700 0.48 +1.2
229,791 + QEN71_RS30700 0.48 -1.0
229,791 + QEN71_RS30700 0.48 +0.8
229,791 + QEN71_RS30700 0.48 +0.1
229,791 + QEN71_RS30700 0.48 -0.3
229,792 - QEN71_RS30700 0.48 -2.0
229,792 - QEN71_RS30700 0.48 -0.8
229,792 - QEN71_RS30700 0.48 -0.8
229,792 - QEN71_RS30700 0.48 +0.1
229,792 - QEN71_RS30700 0.48 +1.3
229,792 - QEN71_RS30700 0.48 -2.0
229,792 - QEN71_RS30700 0.48 -1.8
229,911 + QEN71_RS30700 0.57 -1.0
229,911 + QEN71_RS30700 0.57 -0.9
229,912 - QEN71_RS30700 0.58 +0.1
229,917 + QEN71_RS30700 0.58 -0.5
229,917 + QEN71_RS30700 0.58 +0.4
229,918 - QEN71_RS30700 0.58 +0.0
229,918 - QEN71_RS30700 0.58 +1.1
229,947 + QEN71_RS30700 0.60 +1.8
229,948 - QEN71_RS30700 0.60 -1.7
230,016 + QEN71_RS30700 0.66 +0.3
230,017 - QEN71_RS30700 0.66 -0.3
230,079 + QEN71_RS30700 0.70 +0.5
230,254 - QEN71_RS30700 0.84 -0.6
230,504 + +0.8
230,522 + -0.2
230,535 - -0.2
230,538 - -0.6
230,562 + -1.6
230,562 + +1.7
230,562 + -0.8
230,612 + +0.5
230,876 - QEN71_RS30705 0.36 +0.3
230,876 - QEN71_RS30705 0.36 +1.3
230,876 - QEN71_RS30705 0.36 -0.4
231,200 - QEN71_RS30705 0.74 +1.6
231,436 - +0.3
231,436 - +0.4
231,440 + -0.5
231,440 + +0.1
231,440 + -0.7
231,441 - -0.2
231,696 + QEN71_RS30710 0.42 -0.3
231,696 + QEN71_RS30710 0.42 +0.1
231,697 - QEN71_RS30710 0.42 -0.9
231,697 - QEN71_RS30710 0.42 +0.0
231,697 - QEN71_RS30710 0.42 -0.6
231,971 + -0.2
231,971 + +0.1
231,972 - -0.6
231,972 - +0.4
232,001 - -0.3
232,019 - -0.2
232,019 - -0.5
232,037 + -0.4
232,038 - +0.4
232,070 + QEN71_RS30715 0.15 -0.2
232,071 - QEN71_RS30715 0.16 -0.2
232,071 - QEN71_RS30715 0.16 +0.6
232,071 - QEN71_RS30715 0.16 -0.7
232,071 - QEN71_RS30715 0.16 -1.8
232,099 + QEN71_RS30715 0.23 +0.6
232,099 + QEN71_RS30715 0.23 +0.4
232,100 - QEN71_RS30715 0.23 -1.6
232,289 + QEN71_RS30715 0.69 +0.5
232,289 + QEN71_RS30715 0.69 -0.2
232,289 + QEN71_RS30715 0.69 +0.5
232,290 - QEN71_RS30715 0.69 +0.4
232,290 - QEN71_RS30715 0.69 -0.4
232,290 - QEN71_RS30715 0.69 +0.2
232,290 - QEN71_RS30715 0.69 -0.6
232,412 + -0.8
232,413 - -0.1

Or see this region's nucleotide sequence