Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14095

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14080 and QEN71_RS14085 are separated by 305 nucleotidesQEN71_RS14085 and QEN71_RS14090 are separated by 59 nucleotidesQEN71_RS14090 and QEN71_RS14095 are separated by 64 nucleotidesQEN71_RS14095 and QEN71_RS14100 are separated by 357 nucleotides QEN71_RS14080: QEN71_RS14080 - 23S ribosomal RNA, at 3,140,395 to 3,143,275 _RS14080 QEN71_RS14085: QEN71_RS14085 - tRNA-Ala, at 3,143,581 to 3,143,656 _RS14085 QEN71_RS14090: QEN71_RS14090 - tRNA-Ile, at 3,143,716 to 3,143,792 _RS14090 QEN71_RS14095: QEN71_RS14095 - 16S ribosomal RNA, at 3,143,857 to 3,145,387 _RS14095 QEN71_RS14100: QEN71_RS14100 - alpha/beta hydrolase, at 3,145,745 to 3,146,701 _RS14100 Position (kb) 3143 3144 3145 3146Strain fitness (log2 ratio) -1 0 1 2at 3145.931 kb on + strand, within QEN71_RS14100at 3145.932 kb on - strand, within QEN71_RS14100at 3145.932 kb on - strand, within QEN71_RS14100at 3145.932 kb on - strand, within QEN71_RS14100at 3146.217 kb on + strand, within QEN71_RS14100at 3146.295 kb on + strand, within QEN71_RS14100at 3146.296 kb on - strand, within QEN71_RS14100at 3146.296 kb on - strand, within QEN71_RS14100at 3146.296 kb on - strand, within QEN71_RS14100at 3146.342 kb on + strand, within QEN71_RS14100at 3146.342 kb on + strand, within QEN71_RS14100at 3146.343 kb on - strand, within QEN71_RS14100at 3146.343 kb on - strand, within QEN71_RS14100at 3146.344 kb on + strand, within QEN71_RS14100at 3146.345 kb on - strand, within QEN71_RS14100at 3146.345 kb on - strand, within QEN71_RS14100at 3146.345 kb on - strand, within QEN71_RS14100at 3146.374 kb on + strand, within QEN71_RS14100

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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3,145,931 + QEN71_RS14100 0.19 +0.7
3,145,932 - QEN71_RS14100 0.20 -1.0
3,145,932 - QEN71_RS14100 0.20 +0.6
3,145,932 - QEN71_RS14100 0.20 +0.4
3,146,217 + QEN71_RS14100 0.49 -1.2
3,146,295 + QEN71_RS14100 0.57 +1.0
3,146,296 - QEN71_RS14100 0.58 -1.5
3,146,296 - QEN71_RS14100 0.58 -0.2
3,146,296 - QEN71_RS14100 0.58 +0.3
3,146,342 + QEN71_RS14100 0.62 +1.8
3,146,342 + QEN71_RS14100 0.62 +0.4
3,146,343 - QEN71_RS14100 0.62 +0.0
3,146,343 - QEN71_RS14100 0.62 -1.4
3,146,344 + QEN71_RS14100 0.63 -0.5
3,146,345 - QEN71_RS14100 0.63 -1.1
3,146,345 - QEN71_RS14100 0.63 -0.2
3,146,345 - QEN71_RS14100 0.63 +1.0
3,146,374 + QEN71_RS14100 0.66 +1.0

Or see this region's nucleotide sequence