Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09965

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09960 and QEN71_RS09965 are separated by 140 nucleotidesQEN71_RS09965 and QEN71_RS09970 are separated by 142 nucleotides QEN71_RS09960: QEN71_RS09960 - DUF4410 domain-containing protein, at 2,217,472 to 2,218,239 _RS09960 QEN71_RS09965: QEN71_RS09965 - hypothetical protein, at 2,218,380 to 2,218,709 _RS09965 QEN71_RS09970: QEN71_RS09970 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,218,852 to 2,220,000 _RS09970 Position (kb) 2218 2219Strain fitness (log2 ratio) -2 -1 0 1 2at 2217.469 kb on - strandat 2217.473 kb on + strandat 2217.474 kb on - strandat 2217.474 kb on - strandat 2217.474 kb on - strandat 2217.681 kb on + strand, within QEN71_RS09960at 2217.681 kb on + strand, within QEN71_RS09960at 2217.682 kb on - strand, within QEN71_RS09960at 2217.682 kb on - strand, within QEN71_RS09960at 2217.682 kb on - strand, within QEN71_RS09960at 2217.682 kb on - strand, within QEN71_RS09960at 2217.746 kb on + strand, within QEN71_RS09960at 2217.747 kb on - strand, within QEN71_RS09960at 2217.747 kb on - strand, within QEN71_RS09960at 2217.747 kb on - strand, within QEN71_RS09960at 2218.076 kb on + strand, within QEN71_RS09960at 2218.077 kb on - strand, within QEN71_RS09960at 2218.077 kb on - strand, within QEN71_RS09960at 2218.083 kb on - strand, within QEN71_RS09960at 2218.356 kb on - strandat 2218.356 kb on - strandat 2218.380 kb on - strandat 2218.549 kb on + strand, within QEN71_RS09965at 2218.640 kb on + strand, within QEN71_RS09965at 2218.640 kb on + strand, within QEN71_RS09965at 2218.640 kb on + strand, within QEN71_RS09965at 2218.640 kb on + strand, within QEN71_RS09965at 2218.641 kb on - strand, within QEN71_RS09965at 2218.641 kb on - strand, within QEN71_RS09965at 2218.641 kb on - strand, within QEN71_RS09965at 2218.641 kb on - strand, within QEN71_RS09965at 2218.641 kb on - strand, within QEN71_RS09965at 2218.643 kb on - strand, within QEN71_RS09965at 2218.715 kb on + strandat 2218.715 kb on + strandat 2218.715 kb on + strandat 2218.715 kb on + strandat 2218.715 kb on + strandat 2218.716 kb on - strandat 2218.806 kb on + strandat 2218.807 kb on - strandat 2218.807 kb on - strandat 2218.808 kb on + strandat 2218.808 kb on + strandat 2218.809 kb on - strandat 2218.809 kb on - strandat 2218.809 kb on - strandat 2219.464 kb on + strand, within QEN71_RS09970at 2219.465 kb on - strand, within QEN71_RS09970at 2219.465 kb on - strand, within QEN71_RS09970at 2219.608 kb on + strand, within QEN71_RS09970at 2219.608 kb on + strand, within QEN71_RS09970

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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2,217,469 - +0.2
2,217,473 + -0.7
2,217,474 - -2.2
2,217,474 - -1.0
2,217,474 - -0.4
2,217,681 + QEN71_RS09960 0.27 -0.2
2,217,681 + QEN71_RS09960 0.27 +0.6
2,217,682 - QEN71_RS09960 0.27 +0.7
2,217,682 - QEN71_RS09960 0.27 -0.4
2,217,682 - QEN71_RS09960 0.27 -0.1
2,217,682 - QEN71_RS09960 0.27 -0.1
2,217,746 + QEN71_RS09960 0.36 -0.6
2,217,747 - QEN71_RS09960 0.36 +0.1
2,217,747 - QEN71_RS09960 0.36 -0.9
2,217,747 - QEN71_RS09960 0.36 -0.6
2,218,076 + QEN71_RS09960 0.79 -0.8
2,218,077 - QEN71_RS09960 0.79 -0.5
2,218,077 - QEN71_RS09960 0.79 -0.2
2,218,083 - QEN71_RS09960 0.80 +0.8
2,218,356 - -2.4
2,218,356 - -0.7
2,218,380 - +1.9
2,218,549 + QEN71_RS09965 0.51 -0.7
2,218,640 + QEN71_RS09965 0.79 -0.1
2,218,640 + QEN71_RS09965 0.79 -0.1
2,218,640 + QEN71_RS09965 0.79 +0.0
2,218,640 + QEN71_RS09965 0.79 +0.7
2,218,641 - QEN71_RS09965 0.79 +0.4
2,218,641 - QEN71_RS09965 0.79 -0.8
2,218,641 - QEN71_RS09965 0.79 +0.6
2,218,641 - QEN71_RS09965 0.79 +0.5
2,218,641 - QEN71_RS09965 0.79 +0.4
2,218,643 - QEN71_RS09965 0.80 +0.9
2,218,715 + -0.0
2,218,715 + +2.2
2,218,715 + -0.8
2,218,715 + -0.4
2,218,715 + -2.7
2,218,716 - +0.2
2,218,806 + +0.1
2,218,807 - -0.8
2,218,807 - -0.8
2,218,808 + -2.0
2,218,808 + -0.3
2,218,809 - +0.1
2,218,809 - -0.5
2,218,809 - -0.2
2,219,464 + QEN71_RS09970 0.53 -0.8
2,219,465 - QEN71_RS09970 0.53 -0.0
2,219,465 - QEN71_RS09970 0.53 -0.1
2,219,608 + QEN71_RS09970 0.66 -0.1
2,219,608 + QEN71_RS09970 0.66 +1.0

Or see this region's nucleotide sequence