Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04221

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_04220 and MIT1002_04221 are separated by 4 nucleotidesMIT1002_04221 and MIT1002_04222 overlap by 4 nucleotides MIT1002_04220: MIT1002_04220 - Ribose and galactose chemoreceptor protein, at 87,316 to 88,779 _04220 MIT1002_04221: MIT1002_04221 - Gliding motility regulatory protein, at 88,784 to 90,835 _04221 MIT1002_04222: MIT1002_04222 - Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon, at 90,832 to 91,878 _04222 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 87.815 kb on + strand, within MIT1002_04220at 87.823 kb on - strand, within MIT1002_04220at 87.858 kb on - strand, within MIT1002_04220at 87.860 kb on + strand, within MIT1002_04220at 87.860 kb on + strand, within MIT1002_04220at 87.948 kb on + strand, within MIT1002_04220at 87.948 kb on + strand, within MIT1002_04220at 87.948 kb on + strand, within MIT1002_04220at 87.948 kb on + strand, within MIT1002_04220at 87.948 kb on + strand, within MIT1002_04220at 87.948 kb on + strand, within MIT1002_04220at 87.954 kb on - strand, within MIT1002_04220at 87.956 kb on - strand, within MIT1002_04220at 87.956 kb on - strand, within MIT1002_04220at 87.956 kb on - strand, within MIT1002_04220at 87.956 kb on - strand, within MIT1002_04220at 87.956 kb on - strand, within MIT1002_04220at 87.970 kb on + strand, within MIT1002_04220at 87.976 kb on - strand, within MIT1002_04220at 87.976 kb on - strand, within MIT1002_04220at 87.976 kb on - strand, within MIT1002_04220at 88.039 kb on + strand, within MIT1002_04220at 88.074 kb on - strand, within MIT1002_04220at 88.132 kb on - strand, within MIT1002_04220at 88.171 kb on + strand, within MIT1002_04220at 88.258 kb on - strand, within MIT1002_04220at 88.262 kb on + strand, within MIT1002_04220at 88.322 kb on - strand, within MIT1002_04220at 88.358 kb on - strand, within MIT1002_04220at 88.428 kb on + strand, within MIT1002_04220at 88.670 kb on + strandat 88.756 kb on - strandat 88.909 kb on + strandat 88.926 kb on - strandat 88.991 kb on + strand, within MIT1002_04221at 89.010 kb on - strand, within MIT1002_04221at 89.038 kb on - strand, within MIT1002_04221at 89.056 kb on - strand, within MIT1002_04221at 89.070 kb on + strand, within MIT1002_04221at 89.222 kb on + strand, within MIT1002_04221at 89.355 kb on + strand, within MIT1002_04221at 89.358 kb on + strand, within MIT1002_04221at 89.373 kb on - strand, within MIT1002_04221at 89.383 kb on - strand, within MIT1002_04221at 89.573 kb on + strand, within MIT1002_04221at 89.573 kb on + strand, within MIT1002_04221at 89.579 kb on - strand, within MIT1002_04221at 89.591 kb on - strand, within MIT1002_04221at 89.608 kb on - strand, within MIT1002_04221at 89.621 kb on - strand, within MIT1002_04221at 89.627 kb on + strand, within MIT1002_04221at 89.656 kb on - strand, within MIT1002_04221at 89.663 kb on - strand, within MIT1002_04221at 89.674 kb on - strand, within MIT1002_04221at 89.674 kb on - strand, within MIT1002_04221at 89.684 kb on - strand, within MIT1002_04221at 89.687 kb on + strand, within MIT1002_04221at 89.693 kb on + strand, within MIT1002_04221at 89.693 kb on + strand, within MIT1002_04221at 89.701 kb on - strand, within MIT1002_04221at 89.732 kb on + strand, within MIT1002_04221at 89.773 kb on - strand, within MIT1002_04221at 89.802 kb on + strand, within MIT1002_04221at 89.809 kb on + strand, within MIT1002_04221at 89.864 kb on + strand, within MIT1002_04221at 89.867 kb on + strand, within MIT1002_04221at 89.912 kb on + strand, within MIT1002_04221at 89.975 kb on + strand, within MIT1002_04221at 90.001 kb on + strand, within MIT1002_04221at 90.043 kb on + strand, within MIT1002_04221at 90.053 kb on - strand, within MIT1002_04221at 90.094 kb on - strand, within MIT1002_04221at 90.103 kb on + strand, within MIT1002_04221at 90.128 kb on + strand, within MIT1002_04221at 90.206 kb on + strand, within MIT1002_04221at 90.219 kb on - strand, within MIT1002_04221at 90.278 kb on - strand, within MIT1002_04221at 90.295 kb on + strand, within MIT1002_04221at 90.327 kb on + strand, within MIT1002_04221at 90.327 kb on + strand, within MIT1002_04221at 90.332 kb on + strand, within MIT1002_04221at 90.335 kb on - strand, within MIT1002_04221at 90.335 kb on - strand, within MIT1002_04221at 90.335 kb on - strand, within MIT1002_04221at 90.335 kb on - strand, within MIT1002_04221at 90.350 kb on - strand, within MIT1002_04221at 90.417 kb on + strand, within MIT1002_04221at 90.417 kb on + strand, within MIT1002_04221at 90.417 kb on + strand, within MIT1002_04221at 90.425 kb on - strand, within MIT1002_04221at 90.484 kb on - strand, within MIT1002_04221at 90.485 kb on + strand, within MIT1002_04221at 90.493 kb on + strand, within MIT1002_04221at 90.501 kb on - strand, within MIT1002_04221at 90.540 kb on + strand, within MIT1002_04221at 90.586 kb on + strand, within MIT1002_04221at 90.619 kb on - strand, within MIT1002_04221at 90.751 kb on - strandat 90.771 kb on - strandat 90.818 kb on + strandat 90.849 kb on + strandat 90.864 kb on + strandat 90.864 kb on + strandat 90.864 kb on + strandat 90.864 kb on + strandat 90.864 kb on - strandat 90.866 kb on + strandat 90.866 kb on + strandat 90.866 kb on + strandat 90.866 kb on + strandat 90.866 kb on + strandat 90.866 kb on + strandat 90.866 kb on + strandat 90.866 kb on + strandat 90.866 kb on + strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.874 kb on - strandat 90.934 kb on + strandat 90.952 kb on + strand, within MIT1002_04222at 91.128 kb on - strand, within MIT1002_04222at 91.135 kb on + strand, within MIT1002_04222at 91.143 kb on - strand, within MIT1002_04222at 91.143 kb on - strand, within MIT1002_04222at 91.202 kb on + strand, within MIT1002_04222at 91.209 kb on - strand, within MIT1002_04222at 91.213 kb on + strand, within MIT1002_04222at 91.220 kb on - strand, within MIT1002_04222at 91.228 kb on + strand, within MIT1002_04222at 91.228 kb on + strand, within MIT1002_04222at 91.236 kb on - strand, within MIT1002_04222at 91.236 kb on - strand, within MIT1002_04222at 91.236 kb on - strand, within MIT1002_04222at 91.236 kb on - strand, within MIT1002_04222at 91.341 kb on + strand, within MIT1002_04222at 91.342 kb on + strand, within MIT1002_04222at 91.349 kb on - strand, within MIT1002_04222at 91.349 kb on - strand, within MIT1002_04222at 91.349 kb on - strand, within MIT1002_04222at 91.349 kb on - strand, within MIT1002_04222at 91.350 kb on - strand, within MIT1002_04222at 91.413 kb on - strand, within MIT1002_04222at 91.413 kb on - strand, within MIT1002_04222at 91.413 kb on - strand, within MIT1002_04222at 91.485 kb on + strand, within MIT1002_04222at 91.500 kb on + strand, within MIT1002_04222at 91.553 kb on + strand, within MIT1002_04222at 91.623 kb on + strand, within MIT1002_04222at 91.631 kb on - strand, within MIT1002_04222at 91.631 kb on - strand, within MIT1002_04222at 91.638 kb on - strand, within MIT1002_04222at 91.642 kb on + strand, within MIT1002_04222at 91.664 kb on + strand, within MIT1002_04222at 91.671 kb on + strand, within MIT1002_04222at 91.672 kb on - strand, within MIT1002_04222at 91.694 kb on + strand, within MIT1002_04222at 91.747 kb on + strand, within MIT1002_04222at 91.776 kb on + strandat 91.776 kb on + strandat 91.776 kb on + strandat 91.776 kb on + strandat 91.784 kb on - strandat 91.817 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 6
remove
87,815 + MIT1002_04220 0.34 -0.9
87,823 - MIT1002_04220 0.35 +0.6
87,858 - MIT1002_04220 0.37 +0.5
87,860 + MIT1002_04220 0.37 -0.9
87,860 + MIT1002_04220 0.37 -1.4
87,948 + MIT1002_04220 0.43 -1.5
87,948 + MIT1002_04220 0.43 +0.2
87,948 + MIT1002_04220 0.43 -1.3
87,948 + MIT1002_04220 0.43 +1.5
87,948 + MIT1002_04220 0.43 +0.2
87,948 + MIT1002_04220 0.43 +0.6
87,954 - MIT1002_04220 0.44 -1.3
87,956 - MIT1002_04220 0.44 -0.2
87,956 - MIT1002_04220 0.44 +0.2
87,956 - MIT1002_04220 0.44 -1.0
87,956 - MIT1002_04220 0.44 -0.9
87,956 - MIT1002_04220 0.44 +1.6
87,970 + MIT1002_04220 0.45 -1.9
87,976 - MIT1002_04220 0.45 +0.6
87,976 - MIT1002_04220 0.45 -2.8
87,976 - MIT1002_04220 0.45 -0.5
88,039 + MIT1002_04220 0.49 -2.2
88,074 - MIT1002_04220 0.52 +1.6
88,132 - MIT1002_04220 0.56 -1.7
88,171 + MIT1002_04220 0.58 +0.8
88,258 - MIT1002_04220 0.64 -1.4
88,262 + MIT1002_04220 0.65 +0.4
88,322 - MIT1002_04220 0.69 +0.4
88,358 - MIT1002_04220 0.71 +0.3
88,428 + MIT1002_04220 0.76 +1.2
88,670 + +0.8
88,756 - -1.1
88,909 + -1.3
88,926 - +0.9
88,991 + MIT1002_04221 0.10 +0.4
89,010 - MIT1002_04221 0.11 +0.5
89,038 - MIT1002_04221 0.12 +0.6
89,056 - MIT1002_04221 0.13 +2.2
89,070 + MIT1002_04221 0.14 -2.3
89,222 + MIT1002_04221 0.21 +0.3
89,355 + MIT1002_04221 0.28 -1.0
89,358 + MIT1002_04221 0.28 +0.2
89,373 - MIT1002_04221 0.29 -0.2
89,383 - MIT1002_04221 0.29 +0.4
89,573 + MIT1002_04221 0.38 +0.5
89,573 + MIT1002_04221 0.38 -0.2
89,579 - MIT1002_04221 0.39 -0.9
89,591 - MIT1002_04221 0.39 +1.3
89,608 - MIT1002_04221 0.40 +0.4
89,621 - MIT1002_04221 0.41 +1.8
89,627 + MIT1002_04221 0.41 -0.2
89,656 - MIT1002_04221 0.42 -0.0
89,663 - MIT1002_04221 0.43 -0.1
89,674 - MIT1002_04221 0.43 -0.8
89,674 - MIT1002_04221 0.43 -0.3
89,684 - MIT1002_04221 0.44 +2.6
89,687 + MIT1002_04221 0.44 -0.0
89,693 + MIT1002_04221 0.44 -2.2
89,693 + MIT1002_04221 0.44 -1.5
89,701 - MIT1002_04221 0.45 +0.1
89,732 + MIT1002_04221 0.46 +0.4
89,773 - MIT1002_04221 0.48 +0.2
89,802 + MIT1002_04221 0.50 -0.1
89,809 + MIT1002_04221 0.50 +0.6
89,864 + MIT1002_04221 0.53 -0.4
89,867 + MIT1002_04221 0.53 -1.5
89,912 + MIT1002_04221 0.55 +0.6
89,975 + MIT1002_04221 0.58 +0.9
90,001 + MIT1002_04221 0.59 +0.1
90,043 + MIT1002_04221 0.61 +0.2
90,053 - MIT1002_04221 0.62 +0.9
90,094 - MIT1002_04221 0.64 -0.3
90,103 + MIT1002_04221 0.64 -2.1
90,128 + MIT1002_04221 0.65 +0.0
90,206 + MIT1002_04221 0.69 -0.2
90,219 - MIT1002_04221 0.70 +0.6
90,278 - MIT1002_04221 0.73 -1.0
90,295 + MIT1002_04221 0.74 -1.1
90,327 + MIT1002_04221 0.75 +2.7
90,327 + MIT1002_04221 0.75 +1.1
90,332 + MIT1002_04221 0.75 +0.8
90,335 - MIT1002_04221 0.76 -0.3
90,335 - MIT1002_04221 0.76 +1.9
90,335 - MIT1002_04221 0.76 +0.2
90,335 - MIT1002_04221 0.76 +0.1
90,350 - MIT1002_04221 0.76 -0.3
90,417 + MIT1002_04221 0.80 -2.2
90,417 + MIT1002_04221 0.80 +0.3
90,417 + MIT1002_04221 0.80 +0.9
90,425 - MIT1002_04221 0.80 -1.7
90,484 - MIT1002_04221 0.83 -1.4
90,485 + MIT1002_04221 0.83 -0.5
90,493 + MIT1002_04221 0.83 +0.2
90,501 - MIT1002_04221 0.84 +0.7
90,540 + MIT1002_04221 0.86 +0.6
90,586 + MIT1002_04221 0.88 +0.1
90,619 - MIT1002_04221 0.89 -1.0
90,751 - -0.3
90,771 - -0.4
90,818 + -0.4
90,849 + -0.4
90,864 + +1.7
90,864 + +1.0
90,864 + -0.1
90,864 + +2.9
90,864 - -1.4
90,866 + -0.3
90,866 + -0.4
90,866 + -0.5
90,866 + +0.1
90,866 + +0.1
90,866 + +0.3
90,866 + -0.9
90,866 + +1.1
90,866 + +1.2
90,874 - +0.7
90,874 - +1.9
90,874 - +0.1
90,874 - -0.4
90,874 - +0.5
90,874 - +0.5
90,874 - +0.4
90,874 - -0.7
90,874 - +0.3
90,874 - -1.2
90,874 - -0.3
90,934 + -2.8
90,952 + MIT1002_04222 0.11 +0.3
91,128 - MIT1002_04222 0.28 +0.1
91,135 + MIT1002_04222 0.29 -0.7
91,143 - MIT1002_04222 0.30 +1.7
91,143 - MIT1002_04222 0.30 +2.3
91,202 + MIT1002_04222 0.35 -0.8
91,209 - MIT1002_04222 0.36 -0.4
91,213 + MIT1002_04222 0.36 +1.8
91,220 - MIT1002_04222 0.37 +0.8
91,228 + MIT1002_04222 0.38 -0.7
91,228 + MIT1002_04222 0.38 -1.7
91,236 - MIT1002_04222 0.39 -0.5
91,236 - MIT1002_04222 0.39 -1.4
91,236 - MIT1002_04222 0.39 -0.8
91,236 - MIT1002_04222 0.39 -0.3
91,341 + MIT1002_04222 0.49 +1.1
91,342 + MIT1002_04222 0.49 +1.3
91,349 - MIT1002_04222 0.49 -0.2
91,349 - MIT1002_04222 0.49 +2.9
91,349 - MIT1002_04222 0.49 -2.2
91,349 - MIT1002_04222 0.49 +1.0
91,350 - MIT1002_04222 0.49 +0.8
91,413 - MIT1002_04222 0.55 +1.0
91,413 - MIT1002_04222 0.55 +1.3
91,413 - MIT1002_04222 0.55 +2.3
91,485 + MIT1002_04222 0.62 -0.3
91,500 + MIT1002_04222 0.64 +1.7
91,553 + MIT1002_04222 0.69 -0.1
91,623 + MIT1002_04222 0.76 +0.6
91,631 - MIT1002_04222 0.76 -1.0
91,631 - MIT1002_04222 0.76 -0.9
91,638 - MIT1002_04222 0.77 -0.6
91,642 + MIT1002_04222 0.77 +1.0
91,664 + MIT1002_04222 0.79 -1.8
91,671 + MIT1002_04222 0.80 +0.2
91,672 - MIT1002_04222 0.80 +1.5
91,694 + MIT1002_04222 0.82 +0.9
91,747 + MIT1002_04222 0.87 +0.1
91,776 + -0.5
91,776 + -0.9
91,776 + -1.1
91,776 + +1.3
91,784 - -0.6
91,817 - +0.2

Or see this region's nucleotide sequence